BAC Information

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BAC

Clone NameMSMg01-378E22
Chromosome3 (Build37)
Map Location 85,078,972 - 85,267,567
singlet/doubletdoublet
Overlap genenone
Upstream gene6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
Downstream geneLOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a, LOC634201, Lrba
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378E22.T7 (MSMg01no378_e22.b1)MSMg01-378E22.TJ (MSMg01no378_e22.g1)
ACCAG483184AG483185
length776774
length of high quality
(start - end)		441 (47 - 487)312 (78 - 389)
definitionCHROMAT_FILE: MSMg01no378_e22.b1 PHD_FILE: MSMg01no378_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:46 2005CHROMAT_FILE: MSMg01no378_e22.g1 PHD_FILE: MSMg01no378_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,078,972 - 85,079,407)(85,267,290 - 85,267,567)
sequence
NNTTCAAAAAATTGGGGGCGGTATACGACTCACTATATTCAGAGGATCCG
CGGAATTCCCTCTTAGTCCTGGGCTCCTTCCACACATACCCAGTGCACAC
TTTTCCCAGCCCTGCAGTCCTCTGGGTCCTCGCCTGGAGGGTCCCCACCC
TTCCACCTGCTGCACACCGCACTGCCCAGCCCAGGCATGAAAGAACTAAA
GGGACTGAGCCCGCGACACACCCTGGCTATCTATAGAACATCCCTCTAGG
GGTTCTGCTGACAAGTCACTGGAGATCCCTCCTTGGGCTTTATTATGTCA
CAGGAACCCTGGCTGGAATGCTGAGGATTAAATTCCAAGCCCTTCCCTGT
CGGCCGGGCCCCTAGCCAGACACCGAGTTACCATCCGGGCTCTCGGCCGC
CCCCTACTGAACATTTTTTGCTTTTTTGTCTAGCACCTGCTGGGTTCAGA
GAACCCCCACTCCCTAAAGGTGTTTTGCTCACTCATCCCAGGGACACCTT
TGTATAGTGAGTACACAGATCCAGGCTTCAGATCGGCTTTTATGTCTGTC
TCTCCTTGTGAAATTGGAAAGCTGGCAATCCCTTTTGTGCTAATTGCTTT
ACCCCAGGATACACTAATTCACTATCCAAAAAGGAAGCCGGCCCTTACTC
AGTCAGGGAAATCCAAAAAAGCCGGCCTAAAGGATGGCCAACCGAATCCC
CCCCGGGAGGAAATTAAAAAAGGCCACACGCCCCCGCGATTAAATGTGGT
AAAATAAAAAAAACCTGGGTTCTATG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGTGCACTTGGGTGCAGCAAC
AGCAAACCTGGAGCCTGGAGAGATGTATGTTCTGTCATTTTGGAAGTACC
TTAGGGGGCAAAAGCAAGTGGATTCTGGCCCAGACATTATACCATCCCTA
TGGAGTTGCCCAGAGACTCAGCCTGGGGACACCATCACAGGAGGAGACTG
GGGACAAAATGTAAAATTAACAAGCTACCCTAGAGGGCCATGTGGTAGTT
CAAATGAGAATGCCTCCAAAGGTTTACGTATTTGAGGGCTTGATTTGAAG
TTGGTGGAGTTGTTTGGGAAGGATTAGGAGGTTGGNCNTGNNGGATGATG
TGTTGTCCTCGAAGTGGGCACTGAGGTTTCAATGGCCTATGCCATTCTCT
CTTTCTCTGCCTCCTACTTGGAGATCCGATGTTACGTCCTCCTTTCTGTT
CCAATGCCATGCCCTGTGTGCCTTTCACCATGTTTCCTTGTTCTGACTTA
TACTTTCTCTACACGTTCTTTACTCTCGATTTCCAATTTTATATATTTCT
TCTTTCCCTTGACCTTGTCGCTGTGATATGTTTTCTCCCTATAAATCTTA
TTCGCATATATCCGTTTTTCCCTTCTTGTATTTTCCCCTTTGGATCGCAA
ATACTGCGTATTACCCCCTATTATATTTTCCCTCACCTATATTACAACCA
ATAACCCCTATTCTCCCCTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_e22.b1 MSMg01no378_e22.b1 CHROMAT_FILE:
MSMg01no378_e22.b1 PHD_FILE: MSMg01no378_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:46 2005
         (441 letters)



>mm_chr3_85078767_85079607
          Length = 841

 Score =  804 bits (416), Expect = 0.0
 Identities = 431/436 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattccctcttagtcctgggctccttccacacatacccagtgcacacttttcccagcc 65
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattccctcttaggcctgggctccttccacacatacccagtgcacacttttcccagcc 265

                                                                       
Query: 66  ctgcagtcctctgggtcctcgcctggagggtccccacccttccacctgctgcacaccgca 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctgcagtcctctgggtcctcgcctggagggtccccacccttccacctgctgcacaccgca 325

                                                                       
Query: 126 ctgcccagcccaggcatgaaagaactaaagggactgagcccgcgacacaccctggctatc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctgcccagcccaggcatgaaagaactaaagggactgagcccgcgacacaccctggctatc 385

                                                                       
Query: 186 tatagaacatccctctaggggttctgctgacaagtcactggagatccctccttgggcttt 245
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tatagaacatccctctagtggttctgctgacaagtcactggagatccctccttgggcttt 445

                                                                       
Query: 246 attatgtcacaggaaccctggctggaatgctgaggattaaattccaagcccttccctgtc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 attatgtcacaggaaccctggctggaatgctgaggattaaattccaagcccttccctgtc 505

                                                                       
Query: 306 ggccgggcccctagccagacaccgagttaccatccgggctctcggccgccccctactgaa 365
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggccgggcccctagccagacactgagttaccatccgggctctcggccgccccctactgaa 565

                                                                       
Query: 366 cattttttgcttttttgtctagcacctgctgggttcagagaacccccactccctaaaggt 425
           |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 566 cattttttgcttctttgtctagcacctgctgggttcagagaacccccgctccctaaaggt 625

                           
Query: 426 gttttgctcactcatc 441
           ||||||||||||||||
Sbjct: 626 gttttgctcactcatc 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no378_e22.g1 MSMg01no378_e22.g1 CHROMAT_FILE:
MSMg01no378_e22.g1 PHD_FILE: MSMg01no378_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:46 2005
         (312 letters)



>mm_chr3_85267155_85267866
          Length = 712

 Score =  514 bits (266), Expect = e-150
 Identities = 275/278 (98%)
 Strand = Plus / Minus

                                                                       
Query: 31  ctggagcctggagagatgtatgttctgtcattttggaagtaccttagggggcaaaagcaa 90
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ctggagcctggagagatgtatgttctgtcattttggaagtaccttagggggcaaaagcaa 354

                                                                       
Query: 91  gtggattctggcccagacattataccatccctatggagttgcccagagactcagcctggg 150
           ||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 353 gtggattctggcccaggtattataccatccctgtggagttgcccagagactcagcctggg 294

                                                                       
Query: 151 gacaccatcacaggaggagactggggacaaaatgtaaaattaacaagctaccctagaggg 210
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gacaccatcacaggaggagactggggacaaaatgtaaaattaacaagctaccctagaggg 234

                                                                       
Query: 211 ccatgtggtagttcaaatgagaatgcctccaaaggtttacgtatttgagggcttgatttg 270
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 ccatgtggtagttcaaatgagaatgcctccaaaggtttacgtatttgagggcttgatttg 174

                                                 
Query: 271 aagttggtggagttgtttgggaaggattaggaggttgg 308
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 173 aagttggtggagttgtttgggaaggattaggaggttgg 136


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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