BAC Information

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BAC

Clone NameMSMg01-378G02
Chromosome3 (Build37)
Map Location 158,352,168 - 158,505,689
singlet/doubletdoublet
Overlap geneLOC100041008
Upstream geneLOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7
Downstream geneLOC668905, LOC668907, Depdc1a, Rpe65, Gpr177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378G02.T7 (MSMg01no378_g02.b1)MSMg01-378G02.TJ (MSMg01no378_g02.g1)
ACCAG483240AG483241
length748746
length of high quality
(start - end)		353 (74 - 426)540 (80 - 619)
definitionCHROMAT_FILE: MSMg01no378_g02.b1 PHD_FILE: MSMg01no378_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:51 2005CHROMAT_FILE: MSMg01no378_g02.g1 PHD_FILE: MSMg01no378_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,505,337 - 158,505,689)(158,352,168 - 158,352,707)
sequence
CCGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATC
CGCGGAATTCCCATTTCATACCTAAAATGTTATCTTTCTCTTGCTTTTTA
TAATGCCATTTAGAAATTCTCACTCACAATTCTTGCTAGATTTCTCCATT
GTTTTGGGTTTGGTGCTCCTGGATTCACAAATGACCGTTCGCTTGAATAA
CTCTTTGAAATTTTAAGTTTATCATTTTTGTAGAGTGACCTTATATAATT
TCAAAGGAAACGGTTCTATGTTTAGTTATATCCTTCATTTTCCTCTGAGA
ATTCAGTCCATTTAAAGAACAAAAGCTGTGACCCACTCAAATCAAAAGTA
AGACACCTTGTCCCTTTGGTATAAATATACAAAGTGGGCACAGAGCTGCA
GAGCAATATGCATTTATCTTACTTGTGTAAGATTAAAGATCACAACTAAA
CAATAGACCTCATTGTATGTAGTTATTTGTCAAAGGTATGCCAACACATT
CCATTGTGGCCCATTTATTATTCTAAGTTCAGTTATACAAACTATAAATA
AATTGTAGCTATGAATGAAATTCTTTTTAAAAAAGTATAACTCTGTGTGT
ATACCACTTGCCTTTATTCAAGCAGTTTCAAAAATTGCAAACGAGCGAAC
GTCATATATAATTTAATACATGCCAGCTTACTGATACCTCCATCGCCCTT
CTCACTTACTATTTAAAACACCTTGTTTAAGCTAAGTTCCTCCCAAAT

TCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAAAGTAATTGATAAAAGA
AAGACAGAAGAAAGTGTGGGGAATTCAGCAAATAAATATTTAATTTATTC
AAACACAGTCCGTCGGTGTATAAAAAGTCAATATTTGCATAAGGGAAGCA
CTTTTGATGGAATTCAGAAGTTTGCAGGCAGAAAGTGAACAGAGAAGGAG
TCACCAATTTGAAAATTACATTCCTTACACAACCAGGTGTCTGGAAAGTA
TTTGACTAACGTGTTGACTCAATAATTACAAATACCCAAATACATATTTC
TGCCATCTTTTTGGTCTGCCCTTAAACCCCAGCTTCTTGCTTCCTATCCA
CATCCCTAGGAGAATCTGGGCAATGATAAAATCTTCTAGCCTGGACTCTG
AGCCCTCTCCTGTGGACTGTCCTGAAGACTCAGATTTTCACCCCAAAGTC
TATACACATTGTTGTCCTTGCATGTTGGGATACTGATAGACGATGGAAAA
TCCACCCACAACATACTCCACTTCCTAGTGAAGTACTGACCCATGCATTT
TATTGACCATTTGTATCCAATAAATTCTTGCCACTCTATCAGCCTGACAG
GAGCAGCTGTTTACCTAGCGTTAACAGCCTTTTATACTTGTGGCTCACTG
TCCCCCAGTAATATCACTAAAGCTTCCTTCCGTTCCTGAAGTCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_g02.b1 MSMg01no378_g02.b1 CHROMAT_FILE:
MSMg01no378_g02.b1 PHD_FILE: MSMg01no378_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:51 2005
         (353 letters)



>mm_chr3_158504983_158505735
          Length = 753

 Score =  644 bits (333), Expect = 0.0
 Identities = 348/353 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaatgttatctttctcttgctttttataatgccatttagaaattctcactcacaattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 aaaatgttatctttctcttgctttttataatgccatttagaaattctcactcacaattct 648

                                                                       
Query: 61  tgctagatttctccattgttttgggtttggtgctcctggattcacaaatgaccgttcgct 120
           | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 647 tactagatttctccattgttttgggtttggtgctcctggattcacaaatgactgttcgct 588

                                                                       
Query: 121 tgaataactctttgaaattttaagtttatcatttttgtagagtgaccttatataatttca 180
           |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 587 tgaataactcattgaaattttaagtttatcatttttgtagagtgatcttatataatttca 528

                                                                       
Query: 181 aaggaaacggttctatgtttagttatatccttcattttcctctgagaattcagtccattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 aaggaaacggttctatgtttagttatatccttcattttcctctgagaattcagtccattt 468

                                                                       
Query: 241 aaagaacaaaagctgtgacccactcaaatcaaaagtaagacaccttgtccctttggtata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aaagaacaaaagctgtgacccactcaaatcaaaagtaagacaccttgtccctttggtata 408

                                                                
Query: 301 aatatacaaagtgggcacagagctgcagagcaatatgcatttatcttacttgt 353
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 407 aatatacaaagtgggcacagaactgcagagcaatatgcatttatcttacttgt 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no378_g02.g1 MSMg01no378_g02.g1 CHROMAT_FILE:
MSMg01no378_g02.g1 PHD_FILE: MSMg01no378_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:51 2005
         (540 letters)



>mm_chr3_158351968_158352907
          Length = 940

 Score =  998 bits (516), Expect = 0.0
 Identities = 534/540 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaaagtaattgataaaagaaagacagaagaaagtgtggggaattcagcaaataaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaaagtaattgataaaagaaagacagaagaaagtgtggggaattcagcaaataaatat 260

                                                                       
Query: 61  ttaatttattcaaacacagtccgtcggtgtataaaaagtcaatatttgcataagggaagc 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaatttattcaaacacagtctgtcggtgtataaaaagtcaatatttgcataagggaagc 320

                                                                       
Query: 121 acttttgatggaattcagaagtttgcaggcagaaagtgaacagagaaggagtcaccaatt 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttttgatggaattcggaagtttgcaggcagaaagtgaacagagaaggagtcaccaatt 380

                                                                       
Query: 181 tgaaaattacattccttacacaaccaggtgtctggaaagtatttgactaacgtgttgact 240
           |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 tgaaaattacattccttatacaaccaggtgtctggaaagtatttgactaatgtgttgact 440

                                                                       
Query: 241 caataattacaaatacccaaatacatatttctgccatctttttggtctgcccttaaaccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caataattacaaatacccaaatacatatttctgccatctttttggtctgcccttaaaccc 500

                                                                       
Query: 301 cagcttcttgcttcctatccacatccctaggagaatctgggcaatgataaaatcttctag 360
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagcttcttacttcctatccacatccctaggagaatctgggcaatgataaaatcttctag 560

                                                                       
Query: 361 cctggactctgagccctctcctgtggactgtcctgaagactcagattttcaccccaaagt 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 cctggactctgagccctctcctgtgaactgtcctgaagactcagattttcaccccaaagt 620

                                                                       
Query: 421 ctatacacattgttgtccttgcatgttgggatactgatagacgatggaaaatccacccac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctatacacattgttgtccttgcatgttgggatactgatagacgatggaaaatccacccac 680

                                                                       
Query: 481 aacatactccacttcctagtgaagtactgacccatgcattttattgaccatttgtatcca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacatactccacttcctagtgaagtactgacccatgcattttattgaccatttgtatcca 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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