BAC Information

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BAC

Clone NameMSMg01-378G10
Chromosome3 (Build37)
Map Location 110,583,259 - 110,583,513
singlet/doubletsinglet
Overlap genenone
Upstream geneNtng1, LOC100043181, LOC100043183, Prmt6
Downstream geneLOC100043190, LOC668712
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378G10.T7 (MSMg01no378_g10.b1)MSMg01-378G10.TJ (MSMg01no378_g10.g1)
ACCAG483256AG483257
length771785
length of high quality
(start - end)
259 (326 - 584)469 (75 - 543)
definitionCHROMAT_FILE: MSMg01no378_g10.b1 PHD_FILE: MSMg01no378_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:53 2005CHROMAT_FILE: MSMg01no378_g10.g1 PHD_FILE: MSMg01no378_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNGNGG
AATTCCATAATTGCGAGGTGTTGGAACAATTTTCAGATGACTCTATGTCC
TGTGACCTTTTTATTCCAAAACTAATTGGCAAAATGTCCCAAGGTACTTG
GCAGTATCTACTCTGCTAAAACCCCACCTGGACAGATTCAGTTTCCAGGA
GTTCCATAGACTGTGTCTAAACAGTATACTTAGGCAGTTAATTCTCCAAT
TCTGTCAATGACAAAGATCAGTGTGATGATCAGTCCAAATACATCTCATA
TAATGAAAAAAGAAAACAATTTCTTAACAAACAAAACTGGCAAAGTGACT
ACTGAATATTGGTTGTTAGGTAGTGCTGTAGAGTTGACATATTATTCACT
AACAGTTAAACAAAAACACAAACAAATCAAAACAAAAAAGAAAACAAACA
AACAAACAAACAAACAAACAGCAATAATAAAAATGTGACTACCCTTAACC
TGATTTTGAACCACCTTCTACATAAAGAAGAGAACACAAAGTTACAACAA
TTAAAAAATGTCCTGTATGAAGTTTCTACAGAACTAATTTGTTAGATGAA
GTCATGACTGGTAATGTTATTATTAGATTGCTTATCACCTAAAATACTTG
TCACAAAAATTTAAATTTATTTTGCAGGTGTTTAGAAAAAATGTTATTTA
AAGGTACACGTTACCGTGATGATGTCTTCTATAAACATTAAGGTCTTTTT
TCCCACTGAGAAAAAAAGTTG
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTACACCCCATTTTT
AAATTGTGTTACTTGGTCTTTTTGGATTCCAACTTCTGAGCTCTTCGTAT
ATTTTGCGTATTAGCAGTCTGTCTGATGAAGGGATTGTGAAAACCTTTTC
CCAATCTGTAGGCTGCCATTTTGTCTTATTGACATTGTCCTTCGCCTTAC
AGAAGCTTTTCAACTTCCTGTGGTCCCATTAATTAATACTTGTCCTTAGT
GCCTGAGCTATTGGTGTTTTTCTCGGGATAATTTCTCCTGTGCCGATGCA
TTCAAGGCTATTTTCCACTTTCTTTTCTATTAGATTCAGTGTGTCTGGTT
TAATGTTGAGGCCTTTGATCCATTTAAACTTGAGTTTTGTACAGGGTGAT
AAATATGAATCTAATTGTATTCTTCTACCTGCAGACATCCAGTTAGTTCA
GCACCATTTATTGAAGATGCTTTCCCTGATCCTTTTATATGGTTTGGCTT
CTTTGTCAAAAATCATTTGTCTGTAAGTGGGCAGGTTTATTTCTGGGTCC
TCAAATTTGCTCCACTATGTTTTATAGAAGCTTTTATTTCTAGTTCCCCC
TTAAACTGTTATTTTTCCCTGACGTTCTCTCCCCTTGGACAAGGGGTTTC
CTAAAATTGTGTTTCCCTTTTTTAATTTTGAATTCACCCTTCTCTCTCTC
TCCTTACACGGCCCTGTTCTTCACCTCCCCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_g10.b1 MSMg01no378_g10.b1 CHROMAT_FILE:
MSMg01no378_g10.b1 PHD_FILE: MSMg01no378_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:53 2005
         (259 letters)



>mm_chr3_110583061_110583719
          Length = 659

 Score =  447 bits (231), Expect = e-130
 Identities = 249/255 (97%), Gaps = 2/255 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaaacaaaactggcaaagtgactactgaatattggttgttaggtagtgctgtagagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aacaaacaaaactggcaaagtgactactgaatattggttgttaggtagtgctgtagagtt 258

                                                                       
Query: 61  gacatattattcactaacagttaaacaaaaacacaaacaaatcaaaacaaaaaagaaaac 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 259 gacatattattcactaacagttaaacaaaaacacaaacaaatcaaaacaaaaaacaaaac 318

                                                                       
Query: 121 a-aacaaa-caaacaaacaaacaaacagcaataataaaaatgtgactacccttaacctga 178
           | || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ataagaaaacaaacaaacaaacaaacagcaataataaaaatgtgactacccttaacctga 378

                                                                       
Query: 179 ttttgaaccaccttctacataaagaagagaacacaaagttacaacaattaaaaaatgtcc 238
           ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 379 ttttgaatcaccttctacataaagaagagaacacaaagttataacaattaaaaaatgtcc 438

                          
Query: 239 tgtatgaagtttcta 253
           |||||||||||||||
Sbjct: 439 tgtatgaagtttcta 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)