NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATCAAGACTTACTTCCCATTCAAACTCAAGGTGGGGGACAATTA
TCTATTCCTCAGACAAGGACAAAAAAGAAAAGAAAAGAAAAGAAAAGAAA
ACTCATGGCAGGTATTTAATTAGCTATAAATGATATATAACTACAGAATC
TAATAAATCTTAAATAAAAATCGAGCCACACTGATCTTATAGGAATATCA
ATATAGGACTATTTTTGTGTATGTATTTGTGTGCACAGCAGGAACATGTC
TCTTCAACTTTTACCTTAACGAGCTATTTCTCCTATGTAATCATTTCATT
TATTTCTTTGAATATATAGTGTAAAATACTTACAAAATTGTAACATTTTT
AGCTGTAGGAAGCCCTAAATTTTTCATAAGTCATGGGCCTTGCTTTTCAG
AAGATAAAACAAAACAAAATCTACAAACACAAAGACAAAAAGAATAGATA
CAATCCACATTGTGTACAGAATTAAGACTATACTCTGGCTCTGGGTCTTT
AGCTACTAATCTTTTCAATTAGTTGCACCACATACTTAACAGATAAACTC
CTGAAAGCTGTCAGTAGAAACACTGTCAGTAGACATGGTGACNAGCCCTT
ATTGAAGTATCATTTCCTACTTAGTTACTTTATACAGGCTCTGCTTTCTA
GGACTGAATGAAAATGGAATCATGATATGACTTTCTATTAAGGCNAATTT
GGATTTCATTGGCTATCN

CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGGTTGTTTTGATTTGCATTTCC
CTGATAATTAAGGATGTTGAACATTTTTTTCAGGTGCTTCTCTGCCATTC
GGTATTCCTCAGGTGAGAATTCTTTGTTCAGTTCTGAGCCCCAATTTTTA
ATGGGTTTAATTGATTTTCTGGGGTCCACCTTCTTGAGTTATTTATATAT
ATTGGATATTAGTCCCCTATCCGATTTAGGATAGGTAAAGATCCTTTCCC
AAACTGTTGGTGGCCTTTTTGTCTTATTGGCGGTGTCTTTTGCCGTGCAG
AAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTCTTGATCTTACAGC
AGAAGCCATTGCTGTTCTATTCAGGAATTTTCCCCCTGTACCCATATCTT
TGAGGCTTTTCCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTT
ATGTGGAGTTCCTTAATCCACTTAGATTTGACCTTAGTACAAGGAGATAG
GAATGGATCAATTCGCATTCTTCTACATGATAACAGCCAATTGTGCCAGC
ACCATTTGTTGAAAATGCTGTCTTTTTTTCACTGGGTGGNTTTTGCTCCC
TTGTCAAAGATCAAGGGACCATAGGTGTTGTGGGGTCATTTCTGGGGCTT
TCAATTCTATTCCATTGGGCTACTTGTCTGTCGCTATACACTACCATGAA
GTTTTTAATCCCATG

Query= MSMg01no378_h15.b1 MSMg01no378_h15.b1 CHROMAT_FILE:
MSMg01no378_h15.b1 PHD_FILE: MSMg01no378_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:59 2005
         (566 letters)



>mm_chr3_25034695_25035660
          Length = 966

 Score = 1058 bits (547), Expect = 0.0
 Identities = 557/563 (98%), Gaps = 5/563 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatcaagacttacttcccattcaaactcaaggtgggggacaattatctattcct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ggaattcatcaagacttacttcccattcaaactcaaggtgggggacaattatctattcct 268

                                                                       
Query: 64  cagacaaggacaaaaaagaaaagaaaagaaaagaaaagaaaactcatggcaggtatttaa 123
           |||||||||||||||||||||||||||||||||||||     |||||| |||||||||||
Sbjct: 269 cagacaaggacaaaaaagaaaagaaaagaaaagaaaa-----ctcatgacaggtatttaa 323

                                                                       
Query: 124 ttagctataaatgatatataactacagaatctaataaatcttaaataaaaatcgagccac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttagctataaatgatatataactacagaatctaataaatcttaaataaaaatcgagccac 383

                                                                       
Query: 184 actgatcttataggaatatcaatataggactatttttgtgtatgtatttgtgtgcacagc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actgatcttataggaatatcaatataggactatttttgtgtatgtatttgtgtgcacagc 443

                                                                       
Query: 244 aggaacatgtctcttcaacttttaccttaacgagctatttctcctatgtaatcatttcat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aggaacatgtctcttcaacttttaccttaacgagctatttctcctatgtaatcatttcat 503

                                                                       
Query: 304 ttatttctttgaatatatagtgtaaaatacttacaaaattgtaacatttttagctgtagg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttatttctttgaatatatagtgtaaaatacttacaaaattgtaacatttttagctgtagg 563

                                                                       
Query: 364 aagccctaaatttttcataagtcatgggccttgcttttcagaagataaaacaaaacaaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aagccctaaatttttcataagtcatgggccttgcttttcagaagataaaacaaaacaaaa 623

                                                                       
Query: 424 tctacaaacacaaagacaaaaagaatagatacaatccacattgtgtacagaattaagact 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tctacaaacacaaagacaaaaagaatagatacaatccacattgtgtacagaattaagact 683

                                                                       
Query: 484 atactctggctctgggtctttagctactaatcttttcaattagttgcaccacatacttaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atactctggctctgggtctttagctactaatcttttcaattagttgcaccacatacttaa 743

                                  
Query: 544 cagataaactcctgaaagctgtc 566
           |||||||||||||||||||||||
Sbjct: 744 cagataaactcctgaaagctgtc 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)