NNNGGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXGCGCGGAATTCCACAGGATTTACGCACACAAATAGTATACATGCTCAC
AAGTAGGCAAGCATTCATGTGCACGAAATAAAAAATAAATCTAAAAGAAT
GTTTAACAATATAGAAATAAAAACAAAGAGGAAGTTTGTTTCTTTTACAG
AAGAAACTCTTGCTTCCATTATTTGCTTCTTCTAGACTAGATGACACACA
ATTTCTGATTTCTCTCTACTATCATAATGTTTTAAAATAGAAAAGCAAAT
CAAAGCTTCTATTTTTGATGATTTTATATGATTCTGTTTGAATGCTATTG
CTTACAATCCAATTAGATGACATAGTAAGTCATTTTAGTTTTAAGTTTTC
TTAAAACTGTATTAAACACAACATTGTTCTCTCTTATATTTGGTTTTCAG
TGTGAAGAGGAGTACAATTTTGACAAATTGATATCTGAGTCAGATTTTTC
TTCCTTTTGTAAGAAAGGCATGTGTTATGGAATTTGGATAATTTCAAACT
GTGAGAAACATCAAACATTGAACTGTGTTTTACAGCTATGCAGATCAGTG
AAAGACTTTTACACAAAACACTTCATAGCATATACTTTGTTTTAGGAATT
TTGGCTTATAGAAATATATAAATGCGAAAATATATCTATAAAATTTCAAT
ATTAAGGAGTTTGGAAGATGATAAATTCACTTCCCAAAAATGAT

NNNNCCCGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGATGGGTAGGTGA
CCCTTATCATAATTAATTGCCTCTATCTCTACAGACATTCCAGAACCATT
GCTGGGGGATTAGAAACCATTGCTGGAGAAACCTGGAAACTGTTGCTGAC
TCTGCCCTTGCCTGCAGGCCCTGTAGCAGGGCAGCTTCTGATGGTAGGGC
TATTTTGGATTGGCTGTCTGAGGCCTGAGGTTTTTCCAGTAATTGACTGT
TCTGAACTTGTTTAGTTCTGGGAAACAGATTTTTAGGCTTAATCTACTGA
CTTGCCACTTTGACGTCTGTCTTGGAGTCAGCCTATCTAAGTCCTCTCAT
GATACTCCATTATGCTTGAAGACAGGAGCCTAGCATAACAGTCTTCTGAG
AGCTCCACCGAGCAGCTGATGGAAACAGATATAGAGACCCCCAAGCCAAA
CGGTAAATAGAAAGAGCTGGGGAGTCTTGTGGAAGGGTTTGAGGAGGGAT
TAAAAGACATGAAGGGAATAGGTACACCACAAGAAGACCAACAGAGTCCA
CTGGACCCTTGTGGCCTCCCAGAGACTGAACATCCATCCCAAGAGAAAGC
ATTGGCTAGATCCAGGCCCTCTACACTTATGTAAAACAAGTGGAGATTGA
ACTTCATGCATTTACCCCCCAATTAGCATTTTGGTCCCGTATCT

Query= MSMg01no378_i06.b1 MSMg01no378_i06.b1 CHROMAT_FILE:
MSMg01no378_i06.b1 PHD_FILE: MSMg01no378_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:01 2005
         (565 letters)



>mm_chr3_42531006_42531969
          Length = 964

 Score = 1062 bits (549), Expect = 0.0
 Identities = 561/565 (99%), Gaps = 1/565 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacaaatagtatacatgctcacaagtaggcaagcattcatgtgcacgaaataaaaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacaaatagtatacatgctcacaagtaggcaagcattcatgtgcacgaaataaaaaata 260

                                                                       
Query: 61  aatctaaaagaatgtttaacaatatagaaataaaaacaaagaggaagtttgtttctttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatctaaaagaatgtttaacaatatagaaataaaaacaaagaggaagtttgtttctttta 320

                                                                       
Query: 121 cagaagaaactcttgcttccattatttgcttcttctagactagatgacacacaatttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaagaaactcttgcttccattatttgcttcttctagactagatgacacacaatttctg 380

                                                                       
Query: 181 atttctctctactatcataatgttttaaaatagaaaagcaaatcaaagcttctatttttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttctctctactatcataatgttttaaaatagaaaagcaaatcaaagcttctatttttg 440

                                                                       
Query: 241 atgattttatatgattctgtttgaatgctattgcttacaatccaattagatgacatagta 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgattttatatgattcagtttgaatgctattgcttacaatccaattagatgacatagta 500

                                                                       
Query: 301 agtcattttagttttaagttttcttaaaactgtattaaacacaacattgttctctcttat 360
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 agtcattttagttttaagttttcttaaaaccgtattaaacacaacattgttctctcttat 560

                                                                       
Query: 361 atttggttttcagtgtgaagaggagtacaattttgacaaattgatatctgagtcagattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttggttttcagtgtgaagaggagtacaattttgacaaattgatatctgagtcagattt 620

                                                                       
Query: 421 ttcttccttttgtaagaaaggcatgtgttatggaatttggataatttcaaactgtgagaa 480
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 t-cttccttttgtaagaaaggcatgtgttatggaatttggataatttcaaactgtgagaa 679

                                                                       
Query: 481 acatcaaacattgaactgtgttttacagctatgcagatcagtgaaagacttttacacaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 acatcaaacattgaactgtgttttacagctatgcagatcagtgaaagacttttacacaaa 739

                                    
Query: 541 acacttcatagcatatactttgttt 565
           |||||||| ||||||||||||||||
Sbjct: 740 acacttcaaagcatatactttgttt 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 964
Length adjustment: 10
Effective length of query: 555
Effective length of database: 954
Effective search space:   529470
Effective search space used:   529470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)