TCTTTTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGA
GATCCGCGGAATTCTCATGGCATTGCGTTCTTCCTGTGTTACATTTTTAC
CGACTGTGGGTCCATGAGTACTCTCAGCCACCATGATGACTTCCGAGCAC
CTACCATGTCATAATGTTGAATCCAAGCTTCAGTTAAGCTTCCTCAGCTG
AAGATATTGCTCTACAACTCTTTCTAAATCATTGCCATGAGAATTTCTGT
AGGGAGCTCACTTTTCACATCCCTAAAACAATACATTGTATGTACAAACA
CTAGATTCTTTTTTTTTCTCCTAGCAAATATTTTCTGAACATTAAGTACA
TTCTAGATTGTCTGAAGCTTTCCATCTCAGAATGGACTGTGTACTTAGAT
GGCTAAAGCAATAGTCTTGATGTATGCCTTTGTACAATCTTGGAGTAGTA
GGACAAAGTTTGATCTTAGACATTTTGTTTGAGCTTTCTTTGCCTCAGTT
TCTTCATCTGTGATACTGAAACAATAGAATCTCTTTAGAGAGTTAATGTG
TGAATGTGTGGATTAATCATATTCCTATATACTGCAACTGCCGAACATAT
TATGTATTCAATATACTATGAATGAAATAAATTGAAATTGAAAGTGAAAA
CTTAACCTTTAATTCTCATGGTGAAATGTTCCAACTGCATTATCATCATG
ATTTGTACTTCTTAGAAGATCTTGTN

NTTTTCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACATGACTACTC
TGGCAAGGGGTAACATTTAAATACATGATCCAGTGGTGAGGCAGATATGC
TCTGATTACACTATGATCTGGCTGGAATACAGACACACCTTTAATCCGTA
ACAATGAAGGTAAGGTTAATTTGTAGAAGGAAGCAGCCATGTTTAAAAGT
GACATCTTATTGCGAGGCAGAAAAATAACAAATCCGAGGAAGAGTTGACA
GAATGAGTCAGAGATAGGATACGTCCAACTCTCGTGAGAACAGTAGAGGA
AGAGTGGCTACTTAAAAACAGTGAGAGAAACAAAAGGTGGATGTGGTGTG
GTGGTGGTGGTGNTTNNNNTTTTNNTTTTTCTTTTTTTTTTTTTTTTTTT
TTTCCCCTCTTTCCTCCCCTTTTTTTCTCCTTTTTTTTTCTCCCTCCTTT
TTTTTCTTATTTCTCTTTCTCTTTTTTCTTCTTCTTCCTCTTCCCTATCT
TCTCTTTCTTTCTATTTCCTCTTTTCTATTTCTTTTTTTTTTTTTCATTT
ATTTTCCCTTCTCCCTCTCTCCCTTTCTCTCCTTTTCCTTTTTTTTCTCC
TTCACATACTTATTTTCCCTATTTTTTTTTTTCTCCTCTTCCCATCTCTT
CTCGCTTATATAATCTTCACCTATTTTTCCCCTCCCTTTCCCTTCCCCTT
CTTATCCCCTCATTCT

Query= MSMg01no378_i07.b1 MSMg01no378_i07.b1 CHROMAT_FILE:
MSMg01no378_i07.b1 PHD_FILE: MSMg01no378_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:02 2005
         (537 letters)



>mm_chr3_61989066_61989996
          Length = 931

 Score =  799 bits (413), Expect = 0.0
 Identities = 501/533 (93%), Gaps = 10/533 (1%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctcatggcattgcgttcttcctgtgttacatttttaccgactgtgggtccatgag 66
           |||||||||||||| || |||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 597 gaattctcatggcactgtgttcttcctgtgttacatttttactgaccgtgggtccatgag 538

                                                                       
Query: 67  tactctcagccaccatgatgacttccgagcacctaccatgtcataatgttgaatccaagc 126
           ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 537 tactctcagccaccatgatgacttccgagcatctaccatgtcatgatgttgaatccaagc 478

                                                                       
Query: 127 ttcagttaagcttcctcagctgaagatattgctctacaactctttctaaatcattgccat 186
           |||||||||||||||||||||||||||||||||||| |||    ||||| ||||||||||
Sbjct: 477 ttcagttaagcttcctcagctgaagatattgctctataac----tctaagtcattgccat 422

                                                                       
Query: 187 gagaatttctgtagggagctcacttttcacatccctaaaacaatacattgtatgtacaaa 246
            |||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 421 cagaatttctgcaggcagctcacttttcacatccctaaaacaatccattgtatgtacaaa 362

                                                                       
Query: 247 cactagattctttttttttctcctagcaaatattttctgaacattaagtacattctagat 306
           ||||||||  | |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 361 cactagat--tatttttttctcctagcaaagattttctgaacatcaagtacattctagat 304

                                                                       
Query: 307 tgtctgaagctttccatctcagaatggactgtgtacttagatggctaaagcaatagtctt 366
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 303 tgtctgaagctttccatctcagaacagactgtgtacttagatggctaaagcaatagtctt 244

                                                                       
Query: 367 gatgtatg-cctttgtacaatcttggagtagtaggaca-aagtttgatcttagacatttt 424
           |||||||| || |||||||||||||||||||||||||| || ||||||||| |||| |||
Sbjct: 243 gatgtatgacc-ttgtacaatcttggagtagtaggacagaa-tttgatcttggacacttt 186

                                                                       
Query: 425 gtttgagctttctttgcctcagtttcttcatctgtgatactgaaacaatagaatctcttt 484
           ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 185 gtttgagctttctttgcttcagtttctccatctgtgatactgaaacaatagaatctcttt 126

                                                                
Query: 485 agagagttaatgtgtgaatgtgtggattaatcatattcctatatactgcaact 537
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 125 agagagttaatgtgtgaatgtgtggattaatcaaattcctatatactgcaact 73


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 931
Length adjustment: 10
Effective length of query: 527
Effective length of database: 921
Effective search space:   485367
Effective search space used:   485367
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)