Query= MSMg01no378_i14.b1 MSMg01no378_i14.b1 CHROMAT_FILE:
MSMg01no378_i14.b1 PHD_FILE: MSMg01no378_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:03 2005
(538 letters)
>mm_chr3_123087638_123088576
Length = 939
Score = 830 bits (429), Expect = 0.0
Identities = 497/537 (92%), Gaps = 29/537 (5%)
Strand = Plus / Plus
Query: 5 gaattctctggtgttggctggctagggaaaa-cgttaaaatttggaaacctagtcctaat 63
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattctctggtgagggctggctagggaaaaacgttaaaatttggaaacctagtcctaat 264
Query: 64 gtactggtgaacgtaacacctcctgtctctaataaattaccaagtaaggattcaaacgtt 123
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtactagtgaacgtaacacctcctgtctctaataaattaccaagtaaggattcaaacgtt 324
Query: 124 tggttgaaggtagactgcgttccaagtgcagaatctaaaatttgctctaacttaggttgc 183
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 325 tggttgaaggtagactgtgttctaagtgcagaatctaaaatttgctctaacttaggtggc 384
Query: 184 ttccaatgagtctttcgacaggatctcaagaaaataatcaaacttccttcaaaaccaatc 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttccaatgagtctttcgacaggatctcaagaaaataatcaaacttccttcaaaaccaata 444
Query: 244 tcaagaattcgaagctgggctagggatggctcaaagattaagaacatgcactgctcttcc 303
||||||| |||||||||||||||||||||||||||
Sbjct: 445 tcaagaa--------------------------aagattaagaacatgcactgctcttcc 478
Query: 304 aaaggacctgagttcaagtcccaagcactcacaccaggaggctcacaactacctgtagtt 363
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 479 aaaggacctgagttcaagtcccaagcacccacaccaggaggctcacaactacctgtagtt 538
Query: 364 ccagctccagaaagacccaacacctctggcgctgtgctcacgtgcacatatatatacaca 423
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 539 ccagctccagaaagatccaacacctctggcgctgtgctcacgtgcacatatatatataca 598
Query: 424 cacagaga--caaaccccacataatttaaaataaaaactaatcttaaaaaaaataaagaa 481
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 cacagagagacaaaccccacataatttaaaataaaaactaatcttaaaaaaaataaagaa 658
Query: 482 tctgaagctgactcgggagaaaggcaagacatgaaacactgcttcaacagtgacggt 538
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tctgaagctgacgcgggagaaaggcaagacatgaaacactgcttcaacagtgacggt 715
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 939
Length adjustment: 10
Effective length of query: 528
Effective length of database: 929
Effective search space: 490512
Effective search space used: 490512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_i14.g1 MSMg01no378_i14.g1 CHROMAT_FILE:
MSMg01no378_i14.g1 PHD_FILE: MSMg01no378_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:03 2005
(483 letters)
>mm_chr3_123264615_123265495
Length = 881
Score = 654 bits (338), Expect = 0.0
Identities = 369/380 (97%), Gaps = 4/380 (1%)
Strand = Plus / Minus
Query: 105 acaataattttcttaaaggatgaagaattattttaaactcatttttgttaggaaacatgt 164
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaataattttcttaaatgatgaagaattattttaaactcatttttgttaggaaacatgt 622
Query: 165 taacatttcagggggaaaaaaaaacctctcactgaaccttgtcaataacatacttcactg 224
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taacatttcagggg--aaaaaaaacctctcactgaaccttgtcaataacatacttcactg 564
Query: 225 cacagtaatataatgacagcttttattgatatatacaaagtctaaaaacaggtcatgatg 284
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 563 cacagtaatataatgacagctttta-ggatatatacaaagtctaaaaacaggtcatgatg 505
Query: 285 gaaatccttatgtcgaccatttaatttt-taaaaaatgtctaatattgctatgatcattc 343
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 504 gaaatccttatgtcgagcatttaattttaaaaaaaatgtctaatattgctatgatcattc 445
Query: 344 ggccctctggtgttaaaataacctgttgatgccaaagctcatttgccttttttcagatca 403
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgctctctggtgttaaaataacctgttgatgccaaagctcatttgccttttttcagatca 385
Query: 404 gtattttcatgacccatttgtctaactatggaaatgaccgactgggattatatacatttg 463
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 384 gtattttcatgacccatttgtctaactatggaaacgaccgactgggattatatacatttg 325
Query: 464 tgaatctagccaattttgtg 483
||||||||||||||||||||
Sbjct: 324 tgaatctagccaattttgtg 305
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 881
Length adjustment: 10
Effective length of query: 473
Effective length of database: 871
Effective search space: 411983
Effective search space used: 411983
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
