BAC Information

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BAC

Clone NameMSMg01-378L07
Chromosome3 (Build37)
Map Location 95,750,848 - 95,751,318
singlet/doubletsinglet
Overlap geneAnp32e
Upstream geneRfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14
Downstream geneLOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378L07.T7 (MSMg01no378_l07.b1)MSMg01-378L07.TJ (MSMg01no378_l07.g1)
ACCAG483490AG483491
length769790
length of high quality
(start - end)		513 (49 - 561)471 (75 - 545)
definitionCHROMAT_FILE: MSMg01no378_l07.b1 PHD_FILE: MSMg01no378_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:15 2005CHROMAT_FILE: MSMg01no378_l07.g1 PHD_FILE: MSMg01no378_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAAGCCATCTCTGGTCTACAGAGTGAGTAGTAGGAACAGTCA
AAGCTGCACAGAGAAACCTTGGCTCACAAAACAAAAACAGAATAAAATAA
AATGGTTTGGTAGTGGGGTGAGGAAATGGCCTGGTGATTAAGACTGCACA
TTGCTCTTCCAGATGACCTCTTTGGTTCTCAGAACCCTGACAGTGTATCA
CAGCTACCTGTAACTCCAGCTCCCAGGCTCGGGTGATCCAACACCATTAG
CCTTCACAGGCGCCCCCAAATACATGGCACATACACACACATATACACAT
GATTTAAATATAAAATAAATTATAAAATATATGGTGCACTCAAGAGGCAG
AAGCAGGTGGATCTCTGAGTTTGAGGCTAGCCTGGTCTACATAGTAAGTT
CCATGACAGCCAGGGCTACATAGAGAAACCCCATTTTGAAAAAAATAAAA
AATAAATAAAATAAATAAAAAACATTTTACAAACAAAAACCCATCCTACT
TCATTTAAAAAAGAAAGTATAGTAGCAGTTTCCCTAAACTGGGTATGAAT
TATGATTGAAGGCCTTAGATTTGATCCTGAACATTTTAAAAAGGTTTCTA
TGGGTATACAATACTATACATAAAATTCTTTGTACCCTTTATATGGGTAC
AGCGAAATTCCAAAAACCTTTTATATTCCCTTTTTTGCTTTGGAAAAAGG
CCTCGGGGAAAAAACCCAA

NCGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTTGCAAACTATGCCAGGTTCAAA
ATAAATGCTTATTTTTAAAAATGAAATCTATATATTGACTTTTTATCAAT
CATCTATTGTGCAATCAAAATTAGAGTTCTTGAGTTTAAAAACAACGCAT
AGGGCCTCCAGATAACTATTAAGACTTATTTAGCTTAGTGGGTGGTATTT
TCATGCAAATAAGCAAGGGTGGGTTTTCTATTCTGTAGAAGTTCTGGGTT
CTGTTCTAACCCTCTCTGTACTGTGCGTGTGTATACCATATGTGAAGTCC
TTAGAGACTTTGAGGTTGATTGATACTTTTGTGCAGCTGTGCTTTGACTA
ACGCCATCACAGTGTTAAACACGAGGACGGGCAGCGCTGATCATGGGGTT
CTGACTATTTTGGTTTTTTTCCCTTACTGCTGTAACTTAAGTTTTTGAAA
CTGCATTGCTTTGAATAAATTGAAGCGTTATTAATAATGACTAGCTTCAG
TGTGTGATTGTTCACTCTTCAGAATTATCATCTACTGTTTCAAAAGCCTT
TTATAAACAGAAACGACTTTTTGAAGGGAAGACAGACCTTGTTGACATAA
TTATGTCACAGAAAATTTTTTACTTCCTACACTAGTGGTGGTTATTATAC
CTCTATTTCCCCTCACCTCGCATGGAATAAGGTAAAATGGATTCCTCTTT
TATTTTTGACACCCTCTCCTTTGTTTATCACTCCACATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_l07.g1 MSMg01no378_l07.g1 CHROMAT_FILE:
MSMg01no378_l07.g1 PHD_FILE: MSMg01no378_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:15 2005
         (471 letters)



>mm_chr3_95750648_95751518
          Length = 871

 Score =  903 bits (467), Expect = 0.0
 Identities = 470/471 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttgcaaactatgccaggttcaaaataaatgcttatttttaaaaatgaaatctatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttgcaaactatgccaggttcaaaataaatgcttatttttaaaaatgaaatctatata 260

                                                                       
Query: 61  ttgactttttatcaatcatctattgtgcaatcaaaattagagttcttgagtttaaaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgactttttatcaatcatctattgtgcaatcaaaattagagttcttgagtttaaaaaca 320

                                                                       
Query: 121 acgcatagggcctccagataactattaagacttatttagcttagtgggtggtattttcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgcatagggcctccagataactattaagacttatttagcttagtgggtggtattttcat 380

                                                                       
Query: 181 gcaaataagcaagggtgggttttctattctgtagaagttctgggttctgttctaaccctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaaataagcaagggtgggttttctattctgtagaagttctgggttctgttctaaccctc 440

                                                                       
Query: 241 tctgtactgtgcgtgtgtataccatatgtgaagtccttagagactttgaggttgattgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgtactgtgcgtgtgtataccatatgtgaagtccttagagactttgaggttgattgat 500

                                                                       
Query: 301 acttttgtgcagctgtgctttgactaacgccatcacagtgttaaacacgaggacgggcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttttgtgcagctgtgctttgactaacgccatcacagtgttaaacacgaggacgggcag 560

                                                                       
Query: 361 cgctgatcatggggttctgactattttggtttttttcccttactgctgtaacttaagttt 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 cgctgatcatggggttctgactattttgttttttttcccttactgctgtaacttaagttt 620

                                                              
Query: 421 ttgaaactgcattgctttgaataaattgaagcgttattaataatgactagc 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgaaactgcattgctttgaataaattgaagcgttattaataatgactagc 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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