Query= MSMg01no378_m03.b1 MSMg01no378_m03.b1 CHROMAT_FILE:
MSMg01no378_m03.b1 PHD_FILE: MSMg01no378_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:19 2005
(488 letters)
>mm_chr3_14382992_14383879
Length = 888
Score = 884 bits (457), Expect = 0.0
Identities = 478/485 (98%)
Strand = Plus / Plus
Query: 4 ggaattcattaggatcttccttgcccatcaaagagggaacttgatgcctaaggaggtcag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattaggatcttccttgcccatcaaagagggaacttgatgcctaaggaggtcag 263
Query: 64 gcaaactctagactttggggtcctctgacatgggttgctctccattcctaaatgaaaaaa 123
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcaaactctagactttggggtactctgacatgggttgctctccattcctaaatgaaaaaa 323
Query: 124 aaaattcactatttccacactcaaaggcaagacgccagagaaagagctccttctgatggc 183
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 324 aaaattcactatttccacactcaaaggcaagacgccagagaaagagctctttctgatggc 383
Query: 184 cccacaatcctatgtgcacctccctgcctctcatggggacttcccagactgagatgcacc 243
|||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 384 cccacaattctatctgcacctccctgcctctcatggggacttctcagactgagatgcacc 443
Query: 244 aagaatctcagactcctacccagaggaaactctctgggagccaataaaccacaacctttt 303
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 444 aagaatctcagactcctacccagaggaaactctctggaagccaataaaccacaacctttt 503
Query: 304 ctagcccaataaacccagcttttcctgcctacactgctggtttgctctactgggctccaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctagcccaataaacccagcttttcctgcctacactgctggtttgctctactgggctccaa 563
Query: 364 tggcatgggctcaggtgtcctggccaatagagggtggacattcagcctagaaacagaggt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tggcatgggctcaggtgtcctggccaatagagggtggacattcagcctagaaacagaggt 623
Query: 424 cgatgggggtgaggtgtggagtgagggacctggtctctggaaaggggtgactagacagac 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cgatgggggtgaggtgtggagtgagggacctggtctctggaaaggggtgactagacagat 683
Query: 484 gtctc 488
|||||
Sbjct: 684 gtctc 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_m03.g1 MSMg01no378_m03.g1 CHROMAT_FILE:
MSMg01no378_m03.g1 PHD_FILE: MSMg01no378_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:19 2005
(579 letters)
>mm_chr3_14539681_14540659
Length = 979
Score = 1067 bits (552), Expect = 0.0
Identities = 573/580 (98%), Gaps = 2/580 (0%)
Strand = Plus / Minus
Query: 1 aaaaccacatccaattaaaaagctcaatagtagtagtattatagaagtaccattcagctt 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 aaaaccacatcccattaaaaagctcaatagtagtagtattatagaagtaccattcagctt 720
Query: 61 ccagagtaaaactagtcaagtgtctatgaactgatatcacatacacaaaataagaaaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ccagagtaaaactagtcaagtgtctatgaactgatatcacatacacaaaataagaaaata 660
Query: 121 ctattggcaatacaggtactgacactcatgaaggcaggcaacaaagaaaatgagtgaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ctattggcaatacaggtactgacactcatgaaggcaggcaacaaagaaaatgagtgaaaa 600
Query: 181 acatctcccattgttttctgccactgttactgtatataattctacttctgtaaagaaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 acatctcccattgttttctgccactgttactgtatataattctacttctgtaaagaaaac 540
Query: 241 atacagatactttctatctgatgattctggttggtcaacttatgtacaatttctacttta 300
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 atacagatacaatcaatctgatgattctggttggtcaacttatgtacaatttctacttta 480
Query: 301 tactttcttagctattttttcttcaataaaataaagataaattacttcattgagaagctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tactttcttagctattttttcttcaataaaataaagataaattacttcattgagaagctg 420
Query: 361 taggatttggtcatctaatttctgaagtttcacctcattctgaaagtcgttttcctgatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 taggatttggtcatctaatttctgaagtttcacctcattctgaaagtcgttttcctgatt 360
Query: 421 aattttttctggttcagaagatggacacacagataaaagtgaggctaaaacattgtcttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aattttttctggttcagaagatggacacacagataaaagtgaggctaaaacattgtcttc 300
Query: 481 tggtgtacttttaaattccttcaaagaaggcaacacatccattggtggtgctgacatatc 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 299 tggtgtacttttaaattccttcaaagaaggcaacacatccattggtggtgctgacacatc 240
Query: 541 atcattgacctacgacagagaaaacaa-ccaaaggtcttt 579
||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 239 atcattgacctacgacagagaaa-caaaccaaaggtcttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
