XXXXXXXXXXXXXXXXXXXXXXXXCTAATGCGAGAGAAGCGCGGAATTCA
CATGGTTCCCACATAATTCACGTGCTTGTTAATTACAGCAAGTGAAATGA
ATATTCATGTCCCACAAAGATACAGCATTTTACACCTTAGTCAAGTAATT
AAATTTTTATCAAAGCTAACACTTTCTATTATTGAGGGCCTTCCTCACAG
ACTGCAATGTATGTAGTAACTCTACAGAATTCATGTCAAAAATCCTTAAT
CTGAATGCAAGCAAGAGAACATAATTGGCAAATGCGTACCAGTCCATAGA
CATTGTACAGTACTTCTGTCTTGGTCTCTTCAAATAAGTCGGGGTCATGG
TGCAGACGTTGTTCAATCGTAGAACCCTTGGCTAACAGGCATGTGACCTT
AGGTTGAGTGCCCAGCACCACACATACATACTCAGAGTCAGTATCATGAA
ACCAAAAAGATGAGACAACTATTGTCATTCAAAAGAGACCATATGGCATC
AAAGCATCGTGTAACAAACCAAAGGTAGAAGTGCATGAGTTTCATTAGGG
AACTGTATATCAGAAGACATGGTGGAATCATTCGCTTCTTGGGTATAACG
ATGGAACATGGAGACAAAAGAGAATGTATTCTCAGCAGATGTGTGCTGAG
AAGCTGAAAGGGTTGACATTGAAATAGAACGTAGCCCTTCTGTAAGCTGA
ATAGTGAGGAGGCCCAGAGAGAAGAACTTTCTACTG

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATCTTTATCAATGGATGTATGCTGAATCT
TTCTTGAATCCTAGAGTGGGGGAATCTCATTTGATCTTGGTAATATTTTG
ATGAAGAGTTTTACACCAGTGTTCATCAAGAATAGTGGTTACTTTTTTTT
TTTCATTCAACAATTGACCTTTTTGTTTTATTTTATTTTATTTTTTTCTT
GGATATTTTCTTTATTTGAAATGGAATACTGGTTACTTGTCTAATTGCTG
TGACAAATAGCCTGACAGAAATAACTTAAAGGAGGAAAGATTTATCTGAG
CTCACATTTCGAGGGTTCTGTCTATCACAGCAGAAAGTCACAGCAGCAGG
AGTCTGAGATAGCTGCTCATACTGCACTGCCAGTCAGGGGACAGAAAGAA
AATAATGCTGGTGGTTCCTCAGTATCCCAGCCCATGCAATGGTACAGTTC
ACATTGAAGGTCAGTCTTCTTACTTCTACTAACCTAATCTGGAAACTTCT
TGTAGTCAGACCTAGAGGTTTGTTTCCATGGTNGATCTAAATCCCATGGA
CATCAAGATGAACCATCACATCTGTTTCCTTTTAATCATATGCCTTTTAT
ATAAATTTGGGGAAAGGCTGGACAAAAACCCTTAATATGGTTGGCCTTAA
TGAAGAAAAATCGTTTTAATTCAGGGTCTCCTAAAGAACAGAAACCAAAT
TTTTTCCCCCTTTTTCTTTCACCTAC

Query= MSMg01no379_a09.b1 MSMg01no379_a09.b1 CHROMAT_FILE:
MSMg01no379_a09.b1 PHD_FILE: MSMg01no379_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:40 2005
         (648 letters)



>mm_chr3_99905490_99906537
          Length = 1048

 Score = 1145 bits (592), Expect = 0.0
 Identities = 634/648 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacgtgcttgttaattacagcaagtgaaatgaatattcatgtcccacaaagatacagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacgtgcttgttaattacagcaagtgaaatgaatattcatgtcccacaaagatacagca 260

                                                                       
Query: 61  ttttacaccttagtcaagtaattaaatttttatcaaagctaacactttctattattgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttacaccttagtcaagtaattaaatttttatcaaagctaacactttctattattgagg 320

                                                                       
Query: 121 gccttcctcacagactgcaatgtatgtagtaactctacagaattcatgtcaaaaatcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 gccttcctcacagactgcaatgtatgtagtaactctacagaattcatgtcagaaatcctt 380

                                                                       
Query: 181 aatctgaatgcaagcaagagaacataattggcaaatgcgtaccagtccatagacattgta 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 aatctgaatgcaagcaagagaacataattggcaaatgcgtaccagtccgtagacattgta 440

                                                                       
Query: 241 cagtacttctgtcttggtctcttcaaataagtcggggtcatggtgcagacgttgttcaat 300
           | ||||  ||| |||||||||||||||||||||||||||| |||||| || |||||||||
Sbjct: 441 cggtacaactggcttggtctcttcaaataagtcggggtcagggtgcaaacattgttcaat 500

                                                                       
Query: 301 cgtagaacccttggctaacaggcatgtgaccttaggttgagtgcccagcaccacacatac 360
           | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 cttagaacccttggctaacaggcatgtgaccttaggtttagtgcccagcaccacacatac 560

                                                                       
Query: 361 atactcagagtcagtatcatgaaaccaaaaagatgagacaactattgtcattcaaaagag 420
           |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 atactcagagtcaggatcatgaaaccaaaaagatgagacaactattgtcgttcaaaagag 620

                                                                       
Query: 421 accatatggcatcaaagcatcgtgtaacaaaccaaaggtagaagtgcatgagtttcatta 480
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accatgtggcatcaaagcatcgtgtaacaaaccaaaggtagaagtgcatgagtttcatta 680

                                                                       
Query: 481 gggaactgtatatcagaagacatggtggaatcattcgcttcttgggtataacgatggaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gggaactgtatatcagaagacatggtggaatcattcgcttcttgggtataacgatggaac 740

                                                                       
Query: 541 atggagacaaaagagaatgtattctcagcagatgtgtgctgagaagctgaaagggttgac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atggagacaaaagagaatgtattctcagcagatgtgtgctgagaagctgaaagggttgac 800

                                                           
Query: 601 attgaaatagaacgtagcccttctgtaagctgaatagtgaggaggccc 648
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 attgaaatagaacgtagcccttctgtaagctgaatagtgaggaggccc 848


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)