BAC Information

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BAC

Clone NameMSMg01-379D19
Chromosome3 (Build37)
Map Location 47,503,659 - 47,504,053
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545517, LOC383849, LOC383850, LOC100039426
Downstream geneLOC666202, LOC666208, 1700018B24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379D19.T7 (MSMg01no379_d19.b1)MSMg01-379D19.TJ (MSMg01no379_d19.g1)
ACCAG483897AG483898
length758770
length of high quality
(start - end)		563 (38 - 600)471 (67 - 537)
definitionCHROMAT_FILE: MSMg01no379_d19.b1 PHD_FILE: MSMg01no379_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:57 2005CHROMAT_FILE: MSMg01no379_d19.g1 PHD_FILE: MSMg01no379_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:57 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GTTTACCTCTATGTCCCATTTTTCATAGGGTTATTCTGTTCTCTGTAGTC
TCACTTCTTGAGTTCTTTGTATATATTGGATATTAGCCCTCTATTGGATA
CAGGATTAGTAGATATCATTTCCCAATCTGTTGGTTGCCATTTTGTCCCA
TTGACAGTGTCTTTTGCCTTTCAGAAGCTTTCCACTTTTATGAGGTCCCT
TTTATCAATTCTTGATCTTAGAGCATAAGGTATTGGTGTTCTGTTGAGGA
AATTTTGCCCTGTGCCCATGTGCTGGAGGCTCTTCCCCACTTACTTTTCT
ATTAGTTTAAGTGTATCTGGTTTTATGTGGAGGTCCTTGATCTACTTGGC
CTTGAGCTTTGTACAAGGAAATAAGAATGGATTAATTTTCATTCTTTTAC
ATGCTAACTGCCAGTTGAACCACCACCATTTGTTGAAAATGCTGTCTTTT
TCCCACTGGATTGTTTTAGCTACTTTGTCTCAGATCAAGTGACCATAGGT
GTGTGCGTTCATTTCTGGGTCTTCAATTCTATTCCATTGATCTACCTGCC
TGAAATACCATGCAATTTTTATCACTACTGCTTGAAGGCATGGATGGTGA
TTTCCCCCAAGTTATTTTATTGTTGATAACATTTTTCTTCATTCCGGCCT
TTTTTGTTATTCAAAATACTTTTCCAATTAATCTTTTTTCCTCTTTGAAA
AACGATTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGTCTGAACAGGAAAGGAGGGGGAGAACCCAGAG
GTCCAAGTCCAAACAGTTACAAAAGAATATTACTTATTTCCTTGCTCTCA
TGGACTATTCTGGTTTTCTTTATAAGTCAGAAGCACTTGAGGTAGCAAAA
CCTACAGTTATCTAGCCCCTCTCATATAATCATCAATCGACAACACACCC
GCCAGATTATAAAGTAATTATTAGAATAGTTTTTTAAGTAACAGTTCTCC
TACTTAACTGGCTAGCTTGTGACTGATGACAGAAAATTAACCAATGAATC
ACCAGCAGAAAGAAGTTTTCCAGGCTCCAAAAGCTTTGTGCAGCACCATA
TTTAGGATGACGTCTCCTTTTTTTTTTTCAATTTGCCAAGCTATGACTGT
TTATTAACTGATCAGATTACAAAAATACCATGGGTGACACCTTAGTTCAT
CCATCTAATAAGCCTGTTTATCTGGTCTGTCCTGTTGCCAGCATCTCCAC
CTTTTAAAAAGTGAGTTGTCTTTTTCTTCATTCCACCTCACGGAGAAGAG
GATGAATTCTCCATCTGAGCTTATACGCAGATCCGAGAACAGGGAATAAT
TTTGCATTGTGGGGAATAACTGGGATTTTATACGGTCGGGTTAAATTCTC
TTTGGAGAAAGTGGGATACTATCCACAAAAATAAACTTTCCTCCCTTTTA
ATGCCCTTCGTGTCACGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_d19.g1 MSMg01no379_d19.g1 CHROMAT_FILE:
MSMg01no379_d19.g1 PHD_FILE: MSMg01no379_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:57 2005
         (471 letters)



>mm_chr3_47503182_47504053
          Length = 872

 Score =  756 bits (391), Expect = 0.0
 Identities = 394/395 (99%), Gaps = 1/395 (0%)
 Strand = Plus / Minus

                                                                       
Query: 78  gctctcatggactattctggttttctttataagtcagaagcacttgaggtagcaaaacct 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 gctctcatggactattctggttttctttataagtcagaagcacttgaggtagcaaaacct 813

                                                                       
Query: 138 acagttatctagcccctctcatataatcatcaatcgacaacacacccgccagattataaa 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 acagttatctagcccctctcatataatcatcaatcgacaacacacccgccagattataaa 753

                                                                       
Query: 198 gtaattattagaatagttttttaagtaacagttctcctacttaactggctagcttgtgac 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gtaattattagaatagttttttaagtaacagttctcctacttaactggctagcttgtgac 693

                                                                       
Query: 258 tgatgacagaaaattaaccaatgaatcaccagcagaaagaagttttccaggctccaaaag 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tgatgacagaaaattaaccaatgaatcaccagcagaaagaagttttccaggctccaaaag 633

                                                                       
Query: 318 ctttgtgcagcaccatatttaggatgacgtctcc-tttttttttttcaatttgccaagct 376
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 632 ctttgtgcagcaccatatttaggatgacgtctccttttttttttttcaatttgccaagct 573

                                                                       
Query: 377 atgactgtttattaactgatcagattacaaaaataccatgggtgacaccttagttcatcc 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 atgactgtttattaactgatcagattacaaaaataccatgggtgacaccttagttcatcc 513

                                              
Query: 437 atctaataagcctgtttatctggtctgtcctgttg 471
           |||||||||||||||||||||||||||||||||||
Sbjct: 512 atctaataagcctgtttatctggtctgtcctgttg 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 872
Length adjustment: 10
Effective length of query: 461
Effective length of database: 862
Effective search space:   397382
Effective search space used:   397382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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