Query= MSMg01no379_e09.b1 MSMg01no379_e09.b1 CHROMAT_FILE:
MSMg01no379_e09.b1 PHD_FILE: MSMg01no379_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:00 2005
(588 letters)
>mm_chr3_135405108_135406096
Length = 989
Score = 1009 bits (522), Expect = 0.0
Identities = 552/562 (98%), Gaps = 1/562 (0%)
Strand = Plus / Minus
Query: 5 gaattctcactaatatcccttctgccagcataactctgatcgatgcactgggtggcccac 64
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gaattctcactaaaatcgcttctgccagcataactctgatcgatgcactgggtggcccac 645
Query: 65 aaccccttgagccccagtgcttactgagaatatcttgctctcgtttgaacttaagggaaa 124
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 aaccccttgagccccggtgcttactgagaatatcttgctctcgtttgaacttaagggaaa 585
Query: 125 aaagcgatctccagatcaagtgtctgagcccagggatttgcctctgcgcagacacacaga 184
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 584 aaagcgatctccagatcaagtgtctgagcccagggatttgcctctgtgcagacacacaga 525
Query: 185 gccgtggtattgccgaggggaccttgtaaatgttctttccaaaccagaagcttattgttt 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 accgtggtattgccgaggggaccttgtaaatgttctttccaaaccagaagcttattgttt 465
Query: 245 tacagtatacagccatccaatgactgttgcttttatacttttcacatagaaagaaaatta 304
|||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct: 464 tacagtatacagccatccaatgactgttgcaattataattctcacatagaaagaaaatta 405
Query: 305 aaatagataattttcacatgtgataattgattgaactatctgattgactaaatgagtaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aaatagataattttcacatgtgataattgattgaactatctgattgactaaatgagtaaa 345
Query: 365 attaataagcaaaaaaatgtcaagtttgtgaaagt-aaaaaaaagtgggtttatactaag 423
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 344 attaataagcaaaaaaatgtcaagtttgtgaaagtaaaaaaaaagtgggtttatactaag 285
Query: 424 tgcatctaaatagcataagaaacactttgctcatgaaaaggtagattaaaatttatccaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tgcatctaaatagcataagaaacactttgctcatgaaaaggtagattaaaatttatccaa 225
Query: 484 taaaatcaagaaactaaaagtagataaatagattagatagatagatagatagatagatag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 taaaatcaagaaactaaaagtagataaatagattagatagatagatagatagatagatag 165
Query: 544 atagatagatagatagatagat 565
||||||||||||||||||||||
Sbjct: 164 atagatagatagatagatagat 143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 989
Length adjustment: 10
Effective length of query: 578
Effective length of database: 979
Effective search space: 565862
Effective search space used: 565862
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_e09.g1 MSMg01no379_e09.g1 CHROMAT_FILE:
MSMg01no379_e09.g1 PHD_FILE: MSMg01no379_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:00 2005
(540 letters)
>mm_chr3_135233548_135234486
Length = 939
Score = 1009 bits (522), Expect = 0.0
Identities = 534/538 (99%), Gaps = 1/538 (0%)
Strand = Plus / Plus
Query: 1 tacccactgtaggtgaagtgtgtggctaggattgccagacgaaatgggaactcagatcct 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 tacccactgtaggtgaagtgtgtggctaggattgccagaggaaatgggaactcagatcct 260
Query: 61 acaatagagattgcttgatggcagccatattgattgttggtagacagctgaggggcctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaatagagattgcttgatggcagccatattgattgttggtagacagctgaggggcctga 320
Query: 121 atgttgtatctgattactatctttaggtaggattccctttttcatatagtttggcaataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgttgtatctgattactatctttaggtaggattccctttttcatatagtttggcaataa 380
Query: 181 ctctctttctgaaaagaccaagagatctttgcagcctaggctgattgtgctggcacctgt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 ctctctttctgaaaagaccaagagatctttgcagcctaggctgattgtgctgtcacctgt 440
Query: 241 gtagtctcagactctggaggcagaggcaggaggaccacaaattcaaagttggccccgact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagtctcagactctggaggcagaggcaggaggaccacaaattcaaagttggccccgact 500
Query: 301 atactgttgaatttttcacttctcctcgtcctgagtgttcttgtgagctttaggcttacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atactgttgaatttttcacttctcctcgtcctgagtgttcttgtgagctttaggcttacc 560
Query: 361 actgattctgatggactctcgaatccaaagttaggagctacatttaaactcattggctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actgattctgatggactctcgaatccaaagttaggagctacatttaaactcattggctct 620
Query: 421 gctgtggaagtggcaaaaaaatgttaataagtagctattttgggcactggtttgtgggct 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctgtggaagtggcaaaaaa-tgttaataagtagctattttgggcactggtttgtgggct 679
Query: 481 ttttggtacgacttttatactttttctatatactatatatatatataaataaaaaccc 538
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttttggtatgacttttatactttttctatatactatatatatatataaataaaaaccc 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 939
Length adjustment: 10
Effective length of query: 530
Effective length of database: 929
Effective search space: 492370
Effective search space used: 492370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
