BAC Information

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BAC

Clone NameMSMg01-379E22
Chromosome3 (Build37)
Map Location 151,501,981 - 151,502,412
singlet/doubletsinglet
Overlap genenone
Upstream geneEltd1, Ifi44, H28, Ptgfr
Downstream geneLOC100040741, LOC100040597, LOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3, Ak5, LOC100040705, Pigk, Rpl29-ps1, St6galnac5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379E22.T7 (MSMg01no379_e22.b1)MSMg01-379E22.TJ (MSMg01no379_e22.g1)
ACCAG483951AG483952
length766759
length of high quality
(start - end)
476 (40 - 515)432 (71 - 502)
definitionCHROMAT_FILE: MSMg01no379_e22.b1 PHD_FILE: MSMg01no379_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:02 2005CHROMAT_FILE: MSMg01no379_e22.g1 PHD_FILE: MSMg01no379_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AAACCTTTACTTCTAGTAGTGTTTCCTCTAGGCTATGTTGCCAAGTCTTA
AGTGTTACTTGTAATCTCTTTTCTAAGGCAAGGAATTTTTTTTTTTATCT
AGGTCCCGGTCTTTTGAGAGGACATAGTAAATCAAGAGAATAAATATTGT
AATACCAGTAAATAATAAGGTGTCTATTTCCTCTAAATCCACCCCTGTCA
AACCATTCAAAATATTATCACAGAAAGCCAAAACGATAGTGTATTTCTAG
TCTTTAAGTATCAAAAGGTTATATCTCTCTCTTTATATCAATGAATTACC
TGGTCTGGAGCCCTTTGTACCTTTGTCTACACGATTCTTTATGCACAGGA
AGGGACTGAGTGTAGAAAGACCCGAGTGGTTCTCTGTGTCCCTGGTTTGG
GTTGCAGCTGGCAGCATGTGCTTGTGTGCAGATTTCAGGCAATCCCCAGC
ATAAACAATCTGTCAGGCGATCCAATCTGGCTGTCCTAGACATGAAAAAA
AGGGAGGGAGGGTGGGGGGCAAAGGATACCAAGATGCGAACCCAGAAAGG
CTCTCTTGGGGGGAGAAGCCCCTATTATTCACCGTGGCCGCTAAAAACTA
CCTCCGGGCGGTTGGGTCCCTTAAGCCCTAATCGAGGGGGGGCCGCTCTC
TCCCTCTTACCCTTTTTTTCCTCCCCTCTTTTTAATTTTTGCTCGCTATC
TTCGAGGCAGTTTTTG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCTCTTTAGAACCCCATTCCTTAACCAACA
CATAGTTCAGACAAACTAGACATATTAATATTAGCAGGGCAAGGTGCTCT
CAAAAAGTGAACAATGAACAACTTTTAATGTTGCTCCCAGGCCTATGTGC
CACCCTAATCTGACTCCCAGTTCCTAGTCCCCAAAGACAGTGCTACAAAA
CGGGTTAATCCACAGAAAGAAAAGCCGTCAGGCAAAAACAGAAGAGCTGA
AGATGAGAGGCTGACCAGCCTTTTTAAAATATATCTCATTTTGGTTTTAT
TGCTGCATGTGTGAAGTTGATACGCCTATAGAGCCATTTGTAGACACATC
CATTCACCAGATTCAGTGAGAATTAGCCCTCTGCCTTCTAGGAGACAGAT
ATAAATGCTCTGTGAGCAACCATGAATTGCTGTATTGTGTGGTTCTTGCC
AAGAGATGAGCGTGCTTCTGCAGTAGGCATGTGATGGTGTTCCCAAACCA
GAATTCTCTTTATGTTGAATGGAGACAAAGTTGATGCTAGCTTTGCCTCC
ACTGAAGGAGACCAGAAAAGAACGTACTGTTTGGGTGGACTTACCCCTCC
CACCTTCGGTATACCGGGTTATCTTAAACAACAAAGTTTTTCCCCTTGCC
CCTTGTTTTATGATAAAAATATCCCCTACCACCCCGTTTTGCGCTTTTTT
TACGCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_e22.g1 MSMg01no379_e22.g1 CHROMAT_FILE:
MSMg01no379_e22.g1 PHD_FILE: MSMg01no379_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:02 2005
         (432 letters)



>mm_chr3_151501781_151502612
          Length = 832

 Score =  812 bits (420), Expect = 0.0
 Identities = 429/432 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctctttagaaccccattccttaaccaacacatagttcagacaaactagacatattaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctctttagaaccccattccttaaccaacacatagttcagacaaactagacatattaata 260

                                                                       
Query: 61  ttagcagggcaaggtgctctcaaaaagtgaacaatgaacaacttttaatgttgctcccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagcagggcaaggtgctctcaaaaagtgaacaatgaacaacttttaatgttgctcccag 320

                                                                       
Query: 121 gcctatgtgccaccctaatctgactcccagttcctagtccccaaagacagtgctacaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctatgtgccaccctaatctgactcccagttcctagtccccaaagacagtgctacaaaa 380

                                                                       
Query: 181 cgggttaatccacagaaagaaaagccgtcaggcaaaaacagaagagctgaagatgagagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgggttaatccacagaaagaaaagccgtcaggcaaaaacagaagagctgaagatgagagg 440

                                                                       
Query: 241 ctgaccagcctttttaaaatatatctcattttggttttattgctgcatgtgtgaagttga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgaccagcctttttaaaatatatctcattttggttttattgctgcatgtgtgaagttga 500

                                                                       
Query: 301 tacgcctatagagccatttgtagacacatccattcaccagattcagtgagaattagccct 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacgcctatagagccacttgtagacacatccattcaccagattcagtgagaattagccct 560

                                                                       
Query: 361 ctgccttctaggagacagatataaatgctctgtgagcaaccatgaattgctgtattgtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgccttctaggagacagatataaatgctctgtgagcaaccatgaattgctgtattgtgt 620

                       
Query: 421 ggttcttgccaa 432
           ||| | ||||||
Sbjct: 621 ggtccctgccaa 632


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)