BAC Information

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BAC

Clone NameMSMg01-379G24
Chromosome3 (Build37)
Map Location 14,138,642 - 14,330,588
singlet/doubletdoublet
Overlap gene0710005M24Rik
Upstream geneLOC100039823, LOC100039861, LOC100041679, LOC100041667, LOC100039882
Downstream geneEG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2, EG634323, LOC100039985, LOC751864
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379G24.T7 (MSMg01no379_g24.b1)MSMg01-379G24.TJ (MSMg01no379_g24.g1)
ACCAG484050AG484051
length774780
length of high quality
(start - end)
400 (33 - 432)477 (70 - 546)
definitionCHROMAT_FILE: MSMg01no379_g24.b1 PHD_FILE: MSMg01no379_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:12 2005CHROMAT_FILE: MSMg01no379_g24.g1 PHD_FILE: MSMg01no379_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:12 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(14,330,227 - 14,330,588)(14,138,642 - 14,139,114)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTC
CATCACCTGTTTGGTTTTGTTTTCCTGTTTTTCTTTAAGAACTTCTACCT
GTGTAGCAGTGTTCTCCTGTATTTCTTTAAGTGAGTTATTAAAGTCCTTC
TTGATGTCCTCTACCATCATCATGAGATATGCTTTCAAATCAGGGTCTAG
CTTTTCGGGTGTGTTGGGGTATCCATGATTGGCTGAGGTGGGAGTTCTGA
TGATGATGAGTGGTCTTGGTATTAAACCAAGACACTGTTTTTATCCCTCG
AGCACTGAGAATTCCAAATGACCACAAAATAGCCAAAGCCAGACATTTTG
TTGGTAGCTCTGGAGCTGGGCACCCAGAATAGAAACACTGGATTACAGAA
GTCCTTAAAGAAAAACAGGAAAACAAAACCAAACAGGTGATGGAAATGGG
CAAAACAATACTAGACCTAAAAAGGATAGCAGACACAATAAAGAAGACCC
AAAGCGAGGCTACCCTGGAGATATAAACCCTACGAAAGAAATCCGGAACC
CAAGAAGCAAGCTTCTTCTTCCGAACCCTAGAGAAGGGAAGAAAGAATCT
CTTGGGCTGAACATTCCATTATAAATTTCTGCTCTTCTCTCATAAAAAAA
CCATAAGGCGTTAAAATCCTATCCCTCCACTCCTTGGATAACCCTTATCC
TATGGTTTAACCCTTTTTTCACTTTTCTAAGTTTTTTATTTTATACCACG
ACTTTTTCCCTCTCCCTCTTTTTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACAATATTGAAACAGAAGACCACAGACAAGA
GTGAGACAAAGTTAGGTGTATACCCCATAGAGATTGAATCTGTCTGGTAG
TGGGACATTTGGGAAATTCCTCATAAAATTTACCAAATGAGAGAAACAAT
ATCTCCTTCAAAATTGTAATGTTTAAGTAAGCATAACATTATGTTAATTT
TCAAATGAGTCACATTAAAGTTTTAGTGATTCTTTGTGAACAACTTGGGG
TTATTCTCTAAAAATTCATTTATGTAACTGAAATTTTAGTCAAAATATAT
TTCTCATATGTAACTTTCCTAAAGTTTATGTTCGCTACTAATAGCATCCA
TAATTAATTGAATATTTAGCAGCAGCATTTTTAAATCATTGAATTAAAAC
TCATAACTGTTTAAAATAGAGTATTTAAAAACGAAATTTCAACTTGGCAT
GCAAAAGATTGATTGCAGAATACTGTCTTGCAATAAAAAAAAATGTGAGT
GCTTTTGTAATAACAATCTTTTCTGTTGTCTAAGACAGGTCAGCTGGTAA
TTATCTAACAATTTAAGCCGCTTGTAAAAATCTAAATTCCACCCTCCTCC
AATTTTAGTCCTATTTGAGAATAACTGGGGAAAAAAAAACAATTTATAAA
AAATGTTTTTGAGGGAAAATCCCACCAATTGGGAATTGGTTCCCCGCGAA
CCATAATTCCCTTTGTATATAAACATCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_g24.b1 MSMg01no379_g24.b1 CHROMAT_FILE:
MSMg01no379_g24.b1 PHD_FILE: MSMg01no379_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:12 2005
         (400 letters)



>mm_chr3_14329789_14330588
          Length = 800

 Score =  661 bits (342), Expect = 0.0
 Identities = 357/362 (98%)
 Strand = Plus / Minus

                                                                       
Query: 39  tttcctgtttttctttaagaacttctacctgtgtagcagtgttctcctgtatttctttaa 98
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tttcctgtttttctttaagaacttctacctgtgtagcagtgttctcctgtatttctttaa 741

                                                                       
Query: 99  gtgagttattaaagtccttcttgatgtcctctaccatcatcatgagatatgctttcaaat 158
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gtgagttattaaagtccttcttgatgtcctctaccatcatcatgagatatgctttcaaat 681

                                                                       
Query: 159 cagggtctagcttttcgggtgtgttggggtatccatgattggctgaggtgggagttctga 218
           |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 680 cagggtctagcttttcgggtgtgttggggtatccatgactagctgaggtgggagttctga 621

                                                                       
Query: 219 tgatgatgagtggtcttggtattaaaccaagacactgtttttatccctcgagcactgaga 278
           ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 620 tgatgatgagtggtcttggtattaaaccaagccactgtttttatcccccgagcactgaga 561

                                                                       
Query: 279 attccaaatgaccacaaaatagccaaagccagacattttgttggtagctctggagctggg 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 attccaaatgaccacaaaatagccaaagccagacattttgttggtagctctggagctggg 501

                                                                       
Query: 339 cacccagaatagaaacactggattacagaagtccttaaagaaaaacaggaaaacaaaacc 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 500 cacccagaatagaaacactggattacagaagtccttaaagaaaaacaggaaaacacaacc 441

             
Query: 399 aa 400
           ||
Sbjct: 440 aa 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no379_g24.g1 MSMg01no379_g24.g1 CHROMAT_FILE:
MSMg01no379_g24.g1 PHD_FILE: MSMg01no379_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:12 2005
         (477 letters)



>mm_chr3_14138442_14139318
          Length = 877

 Score =  884 bits (457), Expect = 0.0
 Identities = 469/473 (99%), Gaps = 1/473 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaatattgaaacagaagaccacagacaagagtgagacaaagttaggtgtataccccata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaatattgaaacagaagaccacagacaagagtgagacaaagttaggtgtataccccata 260

                                                                       
Query: 61  gagattgaatctgtctggtagtgggacatttgggaaattcctcataaaatttaccaaatg 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagattgaatctgtctggtagtgagacatttgggaaattcctcataaaatttaccaaatg 320

                                                                       
Query: 121 agagaaacaatatctccttcaaaattgtaatgtttaagtaagcataacattatgttaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagaaacaatatctccttcaaaattgtaatgtttaagtaagcataacattatgttaatt 380

                                                                       
Query: 181 ttcaaatgagtcacattaaagttttagtgattctttgtgaacaacttggggttattctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcaaatgagtcacattaaagttttagtgattctttgtgaacaacttggggttattctct 440

                                                                       
Query: 241 aaaaattcatttatgtaactgaaattttagtcaaaatatatttctcatatgtaactttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaattcatttatgtaactgaaattttagtcaaaatatatttctcatatgtaactttcc 500

                                                                       
Query: 301 taaagtttatgttcgctactaatagcatccataattaattgaatatttagcagcagcatt 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaagtttatgtttgctactaatagcatccataattaattgaatatttagcagcagcatt 560

                                                                       
Query: 361 tttaaatcattgaattaaaactcataactgtttaaaatagagtatttaaaaacgaaattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttaaatcattgaattaaaactcataactgtttaaaatagagtatttaaaaacgaaattt 620

                                                                
Query: 421 caacttggcatgcaaaagattgattgcagaatactgtcttgcaat-aaaaaaa 472
           ||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 621 caacttggcatgcaaaagattgattgcagaatattgtcttgcaattaaaaaaa 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)