Query= MSMg01no379_g24.b1 MSMg01no379_g24.b1 CHROMAT_FILE:
MSMg01no379_g24.b1 PHD_FILE: MSMg01no379_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:12 2005
(400 letters)
>mm_chr3_14329789_14330588
Length = 800
Score = 661 bits (342), Expect = 0.0
Identities = 357/362 (98%)
Strand = Plus / Minus
Query: 39 tttcctgtttttctttaagaacttctacctgtgtagcagtgttctcctgtatttctttaa 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tttcctgtttttctttaagaacttctacctgtgtagcagtgttctcctgtatttctttaa 741
Query: 99 gtgagttattaaagtccttcttgatgtcctctaccatcatcatgagatatgctttcaaat 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gtgagttattaaagtccttcttgatgtcctctaccatcatcatgagatatgctttcaaat 681
Query: 159 cagggtctagcttttcgggtgtgttggggtatccatgattggctgaggtgggagttctga 218
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 680 cagggtctagcttttcgggtgtgttggggtatccatgactagctgaggtgggagttctga 621
Query: 219 tgatgatgagtggtcttggtattaaaccaagacactgtttttatccctcgagcactgaga 278
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 620 tgatgatgagtggtcttggtattaaaccaagccactgtttttatcccccgagcactgaga 561
Query: 279 attccaaatgaccacaaaatagccaaagccagacattttgttggtagctctggagctggg 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 attccaaatgaccacaaaatagccaaagccagacattttgttggtagctctggagctggg 501
Query: 339 cacccagaatagaaacactggattacagaagtccttaaagaaaaacaggaaaacaaaacc 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 500 cacccagaatagaaacactggattacagaagtccttaaagaaaaacaggaaaacacaacc 441
Query: 399 aa 400
||
Sbjct: 440 aa 439
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space: 309281
Effective search space used: 309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_g24.g1 MSMg01no379_g24.g1 CHROMAT_FILE:
MSMg01no379_g24.g1 PHD_FILE: MSMg01no379_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:12 2005
(477 letters)
>mm_chr3_14138442_14139318
Length = 877
Score = 884 bits (457), Expect = 0.0
Identities = 469/473 (99%), Gaps = 1/473 (0%)
Strand = Plus / Plus
Query: 1 acaatattgaaacagaagaccacagacaagagtgagacaaagttaggtgtataccccata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaatattgaaacagaagaccacagacaagagtgagacaaagttaggtgtataccccata 260
Query: 61 gagattgaatctgtctggtagtgggacatttgggaaattcctcataaaatttaccaaatg 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagattgaatctgtctggtagtgagacatttgggaaattcctcataaaatttaccaaatg 320
Query: 121 agagaaacaatatctccttcaaaattgtaatgtttaagtaagcataacattatgttaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagaaacaatatctccttcaaaattgtaatgtttaagtaagcataacattatgttaatt 380
Query: 181 ttcaaatgagtcacattaaagttttagtgattctttgtgaacaacttggggttattctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcaaatgagtcacattaaagttttagtgattctttgtgaacaacttggggttattctct 440
Query: 241 aaaaattcatttatgtaactgaaattttagtcaaaatatatttctcatatgtaactttcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaattcatttatgtaactgaaattttagtcaaaatatatttctcatatgtaactttcc 500
Query: 301 taaagtttatgttcgctactaatagcatccataattaattgaatatttagcagcagcatt 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaagtttatgtttgctactaatagcatccataattaattgaatatttagcagcagcatt 560
Query: 361 tttaaatcattgaattaaaactcataactgtttaaaatagagtatttaaaaacgaaattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttaaatcattgaattaaaactcataactgtttaaaatagagtatttaaaaacgaaattt 620
Query: 421 caacttggcatgcaaaagattgattgcagaatactgtcttgcaat-aaaaaaa 472
||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 621 caacttggcatgcaaaagattgattgcagaatattgtcttgcaattaaaaaaa 673
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|