BAC Information

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BAC

Clone NameMSMg01-379M18
Chromosome3 (Build37)
Map Location 73,833,699 - 73,834,094
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk3, Bche, LOC667425
Downstream geneLOC619764, LOC667434, LOC100041551, EG667459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379M18.T7 (MSMg01no379_m18.b1)MSMg01-379M18.TJ (MSMg01no379_m18.g1)
ACCAG484323AG484324
length765774
length of high quality
(start - end)
500 (61 - 560)394 (69 - 462)
definitionCHROMAT_FILE: MSMg01no379_m18.b1 PHD_FILE: MSMg01no379_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:39 2005CHROMAT_FILE: MSMg01no379_m18.g1 PHD_FILE: MSMg01no379_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
ACCTGTGCGATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACAT
CCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTC
ACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTG
GCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCA
GGCTTGTACAACCACTCTGGAAATCAGTCTGTCGGGTCCTCAGAAAATTG
GACATAGTACTACCGTAGGATCCAGCAATACCTCTCCTGGGCATATATCC
AGAAGATGGCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAG
CAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCA
ACAGAGGAATGGATACAGAAAATGTGGTATATCTACACAATGGAGTACTA
CTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGG
ACCTGGAGGGCATCATCCTGAGTAAGGTAACACATTCACAGAGGAACTCT
CACAATATGTACTCACTGATAATTGGACATTACGCCCAAAACCCTTGATT
ACCCATTATACATTATACCATTTGGTTATCCCATGAAACTCTCAAACAAT
GAACACTGGATTGGGGAACCTAAGGCCCCCCCTTATAATTTGGGAAAATA
ACCCCCCCGTTTGGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATATAGCTCAGTGCAGATCAGAAGAGAGAGTT
CAATCCAAAGAATAAAAAGGAGACAGGAGTTTAGAACAATTTGCCAGAGT
TAGTTTGAGGCCAAGCAGAGCAATTTAGGGAGCCACTGAGAGAATCCAGT
TTGAACCAGTCAGGTTGGAGAGAAGTTTGAGACAGAACAGCTGAGTTGAA
TCAGCCCAAACTAGATAGGTAAGCTAATTCATCTTAATTCTCTGAGATGG
CAATTACATCAAGTGGATAAAAGGTACGTTTACCAGTATGGTTAGTGTTG
ATGGATGCCACTCACTTAGTTTAGAGCTACCAGTTCACATTAACGTATGA
TGACAATGTCCTTTAAAGTACATTAGAGAGTAAATATGATACATTTTTGT
GTGTATTAATAGCTATTCAACATTATTCAACATTTTAGTGTTCCTCCCAA
TATATTATGTGTCTATTTTACCCCTACAAGGAATTGATCTCTCTACCCAA
TAGATTACCTTCTATATAGTCTTTTTTAAATTAACTGAGGTCTTCCTATA
ACATTCACCCCATAATTCCCTTCCCCTTGTAATTTTCTTTACCCACCCCA
CTTTGGGTTTCCCCTGCCCATTTTTCCCCCCCGCCAATATTTTATCGATC
CCCGGGGCCCTTCCTCTCGTTCGATCATCTCGGCTTCCTCCCCTCTTTTT
TTCCCCTTTTCTTTCCCCGCGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_m18.g1 MSMg01no379_m18.g1 CHROMAT_FILE:
MSMg01no379_m18.g1 PHD_FILE: MSMg01no379_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:39 2005
         (394 letters)



>mm_chr3_73833499_73834294
          Length = 796

 Score =  739 bits (382), Expect = 0.0
 Identities = 392/396 (98%), Gaps = 2/396 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatagctcagtgcagatcagaagagagagttcaatccaaagaataaaaaggagacagga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 atatagctcagtgcagatcagaagagagagttcaatccaaagaataaaaaggagccagga 260

                                                                       
Query: 61  gtttagaacaatttgccagagttagtttgaggccaagcagagcaatttagggagccactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttagaacaatttgccagagttagtttgaggccaagcagagcaatttagggagccactg 320

                                                                       
Query: 121 agagaatccagtttgaaccagtcaggttggagagaagtttgagacagaacagctgagttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagaatccagtttgaaccagtcaggttggagagaagtttgagacagaacagctgagttg 380

                                                                       
Query: 181 aatcagcccaaactagataggtaagctaattcatcttaattctctgagatggcaattaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcagcccaaactagataggtaagctaattcatcttaattctctgagatggcaattaca 440

                                                                       
Query: 241 tcaagtggataaaaggtacgtttaccagtatggttagtgttgatggatgccactcactta 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 tcaagtggataaaaggtacgtttaccagtgtggttagtgttgatggatgccactcactta 500

                                                                       
Query: 301 gtttagagctaccagttcacattaacgtatgatgacaatgtcctttaaagtacattagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttagagctaccagttcacattaacgtatgatgacaatgtcctttaaagtacattagag 560

                                               
Query: 361 agtaaatatgatacattttt--gtgtgtattaatag 394
           ||||||||||||||||||||  ||||||||||||||
Sbjct: 561 agtaaatatgatacatttttttgtgtgtattaatag 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 796
Length adjustment: 9
Effective length of query: 385
Effective length of database: 787
Effective search space:   302995
Effective search space used:   302995
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)