Query= MSMg01no379_n12.b1 MSMg01no379_n12.b1 CHROMAT_FILE:
MSMg01no379_n12.b1 PHD_FILE: MSMg01no379_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:42 2005
(519 letters)
>mm_chr3_113996260_113997180
Length = 921
Score = 988 bits (511), Expect = 0.0
Identities = 518/521 (99%), Gaps = 2/521 (0%)
Strand = Plus / Plus
Query: 1 gatttaattttctaaccttgtgatcttttgctttccaactacatgaaaagcaaaactatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatttaattttctaaccttgtgatcttttgctttccaactacatgaaaagcaaaactatt 260
Query: 61 tttctcctttaacatgcctgtgaatgaaccctcagtataggcaagaagattttcatgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttctcctttaacatgcctgtgaatgaaccctcagtataggcaagaagattttcatgttt 320
Query: 121 caagagcttctttaacagttttccaggttattctga--aattcaattcagttctgaagta 178
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 caagagcttctttaacagttttccaggttattctgagaaattcaattcagttctgaagta 380
Query: 179 ttctgttgtaattcagccttgagtgtcaggtaacatgttagggtatcagtccttcaagac 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctgttgtaattcagccttgagtgtcaggtaacatgttagggtatcagtccttcaagac 440
Query: 239 ctctacatgtacaatgtctgtcataacagtaggtgttttctaattctttgtactcataag 298
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctacatgtacaatgtcagtcataacagtaggtgttttctaattctttgtactcataag 500
Query: 299 atgtagataaagattcttgtcacccttctctttgggcttacttaatgtcataagataact 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtagataaagattcttgtcacccttctctttgggcttacttaatgtcataagataact 560
Query: 359 cacaatcataagggaaacatgcacatgatattttttagttggttatatggagagaaatgt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacaatcataagggaaacatgcacatgatattttttagttggttatatggagagaaatgt 620
Query: 419 aatgaaaatttacaaaagtacagtcataaaaagaactacacaggcaggggaagttctgaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatgaaaatttacaaaagtacagtcataaaaagaactacacaggcaggggaagttctgaa 680
Query: 479 ggactcctggtgtaagaactgctgttttcatgaatttggga 519
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggactcctggtgtaagaactgctgttttcatgaatttggga 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 921
Length adjustment: 10
Effective length of query: 509
Effective length of database: 911
Effective search space: 463699
Effective search space used: 463699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_n12.g1 MSMg01no379_n12.g1 CHROMAT_FILE:
MSMg01no379_n12.g1 PHD_FILE: MSMg01no379_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:42 2005
(481 letters)
>mm_chr3_114130580_114131460
Length = 881
Score = 907 bits (469), Expect = 0.0
Identities = 478/481 (99%)
Strand = Plus / Minus
Query: 1 caggacagccagggctatacagagaaaccctgtcttaaaaacaaaaatgaaaatgaggta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 caggacagccagggctatacagagaaaccctgtcttaaaaacaaaaatgaaaatgaggta 588
Query: 61 cacagaatgaatagtgttgtcaggacttatttcattatgatataagcaatatatctttag 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 cacagaatgaatagtgttgccaggacttatttcattatgatataagcaatatatctttag 528
Query: 121 cttctatatctctagatataagagcaaagttctaaagtatatacatgaattatatgcaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 cttctatatctctagatataagagcaaagttctaaagtatatacatgaattatatgcaat 468
Query: 181 gaatataattttttcacatatagtcatcaatactggtaatagtttaagtaaaaacaaccc 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gaatatatttttttcacatatagtcatcaatactggtaatagtttaagtaaaaacaaccc 408
Query: 241 gtattgtttggtcaacttgaattgattttgagttgagtttgatacttgagtgtgattttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gtattgtttggtcaacttgaattgattttgagttgagtttgatacttgagtgtgattttg 348
Query: 301 gacaaggaggaatgctgggaatggagctcaggtttggagagcgggctttgcaccttagaa 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 347 gacaaggaggaatgctgggaatggagctcaggtttggagagcgggctttgcaccttggaa 288
Query: 361 gccataccatcaattcctagcactgaaagtaaaggagaaagaaaaaaataaaaattattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gccataccatcaattcctagcactgaaagtaaaggagaaagaaaaaaataaaaattattt 228
Query: 421 tgtcacatttgaaataatttcatatttaatgaattttaaataagtattatttgaatcttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 tgtcacatttgaaataatttcatatttaatgaattttaaataagtattatttgaatcttc 168
Query: 481 t 481
|
Sbjct: 167 t 167
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
