BAC Information

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BAC

Clone NameMSMg01-379N18
Chromosome3 (Build37)
Map Location 94,887,829 - 94,888,309
singlet/doubletsinglet
Overlap genePip5k1a
Upstream geneLOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4
Downstream geneVps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379N18.T7 (MSMg01no379_n18.b1)MSMg01-379N18.TJ (MSMg01no379_n18.g1)
ACCAG484371AG484372
length770797
length of high quality
(start - end)		484 (60 - 543)351 (68 - 418)
definitionCHROMAT_FILE: MSMg01no379_n18.b1 PHD_FILE: MSMg01no379_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:43 2005CHROMAT_FILE: MSMg01no379_n18.g1 PHD_FILE: MSMg01no379_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAAANCAA
GGAGTGCCTGAGCCATATAACACTGTCTCATACAAATAAAAGACTACTGC
TGCTCAGAAATCTTTCCTGGCATTTGTTGAAAATATCTTCAGTAGCTATG
CAGTGGTGGCACACACCTTTAACCCCAGCAATTGGAAGGCAGGGGCAGGC
AGAAGCAAAGGCAAGCAAGTTCCTGTTCAAGCCCAGCCTTGTCTACAAAG
TAAGTTCCGTAATAGCCAGGAACTACACAGAGAAACCATTCCTTGAAAAA
TAAACAAAACAAACATCTTTAACGTATATTATCTTATAATTCATGTTCAT
AATCCATACATTTCTTAATGGGTGGAGAAGTTAAATACAAGTCAGATGAG
TTCTGACACTAGAATTAACTCTCCTACTTATAGAGAAATGTTTTTTTCTC
AGGATTTCGGAACCTTACCTCCTCCCCATCTAAGATAAACTCTGAAGCCT
CTTTAATTAAATATTCACACTATCACGGCCCATACTTGGAAAAGTAGATG
CTACCCCAGATGAGGATACATCATCACCTGATCGCATGTGTATGGTATAT
AGGCTGACAGCTTGCCTATAAATGCTATTAAAGAAGTCTTCTCTGACTTA
AAAAAACAACTAAAAATTGGACAGAAAAACCCCGGCTTGTTGCTTTTAAC
CCATAATTCTGTGGAAGTACAATTCTCCAGCCACAAAAAGGGGAATATAT
TCCCCTTTTTTTCCTTTCAC

ATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTGGAACTTTTCAGAGGGTATATAAATGCCAGA
GCCCTGAGAGGGAAAGATTGGTGTTTGCTCATGGCACAAGGGGGATTGGT
TTGTGGTTTGTTAGTAGTCGTGCTCAAAGAAGAAAGAAATTAGATTCAGA
AATCTCTCTCTCTCTCTCCCTTCTCCCCTCTCCTTCTTTCTCTCCTATCT
ATTGATACAGGGTAAAATTGGAAGGTGGGGAATAAAGGATGGGAAAAAGA
AGAATCACTGCGAAGTATCAAAGACCAGCTACTTGCTGTCTTTTTATTTT
ATTGAGGAACCTTAGGTTCAGGGGGTTAATATCACTTCTGGGTCTTATTC
ATAAGACGCAATATAGCTGAGCTACTTTTCAAAACAATGCTGTCTTATTT
GAAAGCCTGTTTTCTCCCTATTCTACCTTAGTTTCCAGTATGTTAGCACC
ACTTACCTTTTTTAGTGATGCCTCACATTAGTGTTGCATGTTTTACAAAA
TCTTTAATTATCCTTCGCTGCTAAACGACACACTTTCTGTAATCTTTTAA
TCGCCCCACCCTTACCCCCTCACTAACACTTTCTTGATGCCTTTTTAACC
CCCTCAATTTTACCCAATCATTATCTTTCATCCTTTACACATAACACCCC
CCCTCCCCCCATTTTATTCCCAAATACATCCAACAACATCCACAATTATA
ACTTTTAACACCCCCATAACACTCTTTTACCCATATCCCATCCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_n18.b1 MSMg01no379_n18.b1 CHROMAT_FILE:
MSMg01no379_n18.b1 PHD_FILE: MSMg01no379_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:43 2005
         (484 letters)



>mm_chr3_94887629_94888509
          Length = 881

 Score =  920 bits (476), Expect = 0.0
 Identities = 481/484 (99%), Gaps = 3/484 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagccatataacactgtctcatacaaataaaagactactgctgctcagaaatctttcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagccatataacactgtctcatacaaataaaagactactgctgctcagaaatctttcctg 260

                                                                       
Query: 61  gcatttgttgaaaatatcttcagtagctatgcagtggtggcacacacctttaaccccagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatttgttgaaaatatcttcagtagctatgcagtggtggcacacacctttaaccccagc 320

                                                                       
Query: 121 aattggaaggcaggggcaggcagaagcaaaggcaagcaagttcctgttcaagcccagcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattggaaggcaggggcaggcagaagcaaaggcaagcaagttcctgttcaagcccagcct 380

                                                                       
Query: 181 tgtctacaaagtaagttccgtaatagccaggaactacacagagaaaccattccttgaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtctacaaagtaagttccgtaatagccaggaactacacagagaaaccattccttgaaaa 440

                                                                       
Query: 241 ataaacaaaacaaacatctttaacgtatattatcttataattcatgttcataatccatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataaacaaaacaaacatctttaacgtatattatcttataattcatgttcataatccatac 500

                                                                       
Query: 301 atttcttaatgggtggagaagttaaatacaagtcagatgagttctgacactagaattaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttcttaatgggtggagaagttaaatacaagtcagatgagttctgacactagaattaac 560

                                                                       
Query: 361 tctcctacttatagagaaatgtttttttctcaggatttcggaaccttacctcctccccat 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct: 561 tctcctacttatagagaaatgtttttttctcaggatttcggaaccttacctcc---ccat 617

                                                                       
Query: 421 ctaagataaactctgaagcctctttaattaaatattcacactatcacggcccatacttgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctaagataaactctgaagcctctttaattaaatattcacactatcacggcccatacttgg 677

               
Query: 481 aaaa 484
           ||||
Sbjct: 678 aaaa 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 881
Length adjustment: 10
Effective length of query: 474
Effective length of database: 871
Effective search space:   412854
Effective search space used:   412854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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