BAC Information

Click to search

BAC

Clone NameMSMg01-380C02
Chromosome3 (Build37)
Map Location 19,104,479 - 19,104,989
singlet/doubletsinglet
Overlap geneMtfr1
Upstream geneCyp7b1, LOC622921, LOC100040153, Armc1
Downstream genePde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380C02.T7 (MSMg01no380_c02.b1)MSMg01-380C02.TJ (MSMg01no380_c02.g1)
ACCAG484579AG484580
length754753
length of high quality
(start - end)
510 (60 - 569)365 (65 - 429)
definitionCHROMAT_FILE: MSMg01no380_c02.b1 PHD_FILE: MSMg01no380_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:06 2005CHROMAT_FILE: MSMg01no380_c02.g1 PHD_FILE: MSMg01no380_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTCCAGAA
AATTCTCTGACAGCCAACAAAACCCTTTCTTGTTGTTTTTCTTCTTACAA
AGAAAAAAATCTTTGTAAGTAAATAAACTGACAGCACAATTTTGGAAATT
TGGGACAGAAGACAGATTAAATATTAAAATGTGAATGAAGTTATACAAAG
AATTTATAAGGCAAAGTTACCCTAGTTTACAGAAAATATGAATAGCACCA
ACAATGATATAGAGGACTATCAGCAGTCCTCATTACATGAGGACAAGGAA
GAACTTCCAACAGAAAAATGGTTCTCACAGTTCAGAGCAACAAAAAAGAA
TCAGCAGCCAAGAAAGAATATGAAAAAGTCATTATAGAACACAATCTTTA
AGCTTTTTACCTTATACATTTTAATAGGTCTTGATCTTTAAAATAAAACC
CAGAAGGCAATCGTAACTACAGCACTCAGTCATTTCTTTTCCAATCTCCC
ATTTAGTCACAAGCCAAAGCTCTACTGTGATGTAGGAAACTCGGAATGCT
ATTTGTACCAATTACCTAGTCTGCAGTGACCCTCCACCTCTCTAGGAAAC
AAAGTCCTGCCCAAGGAGGAAGAAAGATCGTATAGAAAACCTTGTAAAGG
ACCAGCCCCGGTCAGGGCCAATGCTTCTTGCAGCTTCCAGCAACCCTCAC
TAGTCTTCCCTTCTGGTTAACATCTTTCAGGATAGAAAGCCCCCCGCCCT
CCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTG
AAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAAC
CCTGAGTTTCCACCTCACACCAGACAGAATGGCTAAGATCAAAAATTCAG
GTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACGCTCCTCCAT
TGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGACG
GTTCCTCATATTTCTGGACATAGTACTACCGGAGGATCCAGCAATACCTC
TCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGC
TCCAATATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGA
ACCTAGATGCCCCTCAACAGAGGAATGGATACTGAAAATGTGGTACATCT
ACCCCATGTAGTACTACTCTGCTATTAAAAAGAATGAATTTATGAAATTC
CTAGCTCAATGGATGGATCTGGAGGGCTTCTTCCCGAATGAGGCAACACA
TTTTTAAAGAACCTCCCACTATATTGTACTCTCTGATAATCGGATATTAC
CCCCTTACCCAGTGATACCCTATAATTACGAAATCAACTGGCCAACCCCC
TGAACACTTTTAAACAAATGAGTATTGATCTGTGCACATTTTTGTCCCCC
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_c02.b1 MSMg01no380_c02.b1 CHROMAT_FILE:
MSMg01no380_c02.b1 PHD_FILE: MSMg01no380_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:06 2005
         (510 letters)



>mm_chr3_19104279_19105189
          Length = 911

 Score =  973 bits (503), Expect = 0.0
 Identities = 509/511 (99%), Gaps = 1/511 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagccaacaaaaccctttcttgttgtttttcttcttacaaag-aaaaaaatctttgtaa 59
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 711 acagccaacaaaaccctttcttgttgtttttcttcttacaaagaaaaaaaatctttgtaa 652

                                                                       
Query: 60  gtaaataaactgacagcacaattttggaaatttgggacagaagacagattaaatattaaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gtaaataaactgacagcacaattttggaaatttgggacagaagacagattaaatattaaa 592

                                                                       
Query: 120 atgtgaatgaagttatacaaagaatttataaggcaaagttaccctagtttacagaaaata 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 atgtgaatgaagttatacaaagaatttataaggcaaagttaccctagtttacagaaaata 532

                                                                       
Query: 180 tgaatagcaccaacaatgatatagaggactatcagcagtcctcattacatgaggacaagg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tgaatagcaccaacaatgatatagaggactatcagcagtcctcattacatgaggacaagg 472

                                                                       
Query: 240 aagaacttccaacagaaaaatggttctcacagttcagagcaacaaaaaagaatcagcagc 299
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aagaacttccagcagaaaaatggttctcacagttcagagcaacaaaaaagaatcagcagc 412

                                                                       
Query: 300 caagaaagaatatgaaaaagtcattatagaacacaatctttaagctttttaccttataca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 caagaaagaatatgaaaaagtcattatagaacacaatctttaagctttttaccttataca 352

                                                                       
Query: 360 ttttaataggtcttgatctttaaaataaaacccagaaggcaatcgtaactacagcactca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttttaataggtcttgatctttaaaataaaacccagaaggcaatcgtaactacagcactca 292

                                                                       
Query: 420 gtcatttcttttccaatctcccatttagtcacaagccaaagctctactgtgatgtaggaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gtcatttcttttccaatctcccatttagtcacaagccaaagctctactgtgatgtaggaa 232

                                          
Query: 480 actcggaatgctatttgtaccaattacctag 510
           |||||||||||||||||||||||||||||||
Sbjct: 231 actcggaatgctatttgtaccaattacctag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 911
Length adjustment: 10
Effective length of query: 500
Effective length of database: 901
Effective search space:   450500
Effective search space used:   450500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)