BAC Information

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BAC

Clone NameMSMg01-380L01
Chromosome3 (Build37)
Map Location 124,475,246 - 124,475,611
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817
Downstream geneLOC668820, Ndst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380L01.T7 (MSMg01no380_l01.b1)MSMg01-380L01.TJ (MSMg01no380_l01.g1)
ACCAG485006AG485007
length764780
length of high quality
(start - end)
375 (40 - 414)375 (70 - 444)
definitionCHROMAT_FILE: MSMg01no380_l01.b1 PHD_FILE: MSMg01no380_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:50 2005CHROMAT_FILE: MSMg01no380_l01.g1 PHD_FILE: MSMg01no380_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAGATCCGCGGAATTCA
TTCCGAGTAACCAGCTAAGTTGTTCTCTCTATGAAGAAATGTTGCAAATA
ATTATCCATGTGCTTTTGTGGTCTTTTTTTTTCTATCATAATTACACAAC
TCTTTCCCTTTCCTTTTTTTCAAATCCTCTCATACAACCCTCTTTGCTCA
TAATCAAATTCATGGTCTCTCTTTTCATTATTTGTAGCTACACATATGTA
TGTTGTATATGTGTATATATTTGTAAGTATATGCTATTGCATATGCTGTA
TATGTATGTATAAATATGCTCAAATGTCTTTGTATTCCTAAACTTCTCAG
AATGTATGGTATTACTTATATGTGTTTTGTTTGCTGGTATGAGAATTTGG
CATTACATAATCATGTGTAACACTCGTACTTCTTTGTATAGAATTGGAGG
TCTTAAGGAGCCCTTTCTCTTATCCACTACGCCAAGCCTATAGTGCCCAT
TATTTGACTCATGCTTACATTGCCCTGCTGCTGACACCTTATGGATACAT
ATTCAGACGCTCAAAGCCCATATAACCCTCCGACTAAACTCCCCGATCTC
CATATATCCTAAAAACTCGCTTCTCCTCCCCTTTTAAATATCTTTACCAC
TACCTCCTAAATACCACATCGTTTCCCAAACATTCTGTATCCCTTCGCCC
CATCCTTTAACCTCTCTATTTTCTTCCTTCATTCACCCTACCCTTTCACC
ACACCATATTTCTN
TGCTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGTGAACACACATGTGTATTGGTCTGTCT
TACATTGCATAGTTAAGCTGTATTTGTTGAGACTCCATAGAGAGAAATGG
ATTCTGGTGGCATGTTATACTTTCTTGCCACTTCTGCAGACTGACTGATA
GTGTGATGTCAGCTGAGACAAGACCCGTATAAGACATGTGGTGCTTACAG
GGAAGAAATAGGACCTGATGGACAGTTATGGAGAAAGAGCTTGGCTTGCT
CATAGAGCTAGCTGTGAAAGCTTGTTGGTCTCACATCTGCTGATGTCCAA
TTCTCTGAAAGAGGCAGAGTAGAAAATTTCTCCTGGCATTCCTTCTGATC
CCTCCTGCTGACTCATGTATAGGCTGAGGCCTGGCTGTCTCTGTTAGGTA
GTACCACAGCTGCTGGCTCTTGTTTGCTATCTTTACTCTACCAAATTGGA
CTACTGCTGTATCTGTTTAGCCATTTTGAATATATCGAGCCTGCCCCTAC
TGACATGTGTACTGAACTTGCCCTTTTTCTCATAATTTATTATTAGAATT
GTCCCCCATAATCTCTTCCCAAACCGGCTCTTTTTTCTCCCTTACCTCTT
TCCTTTCCCTCCCTCTCCTTTTCTCTTTCTCCACCTTCTTCACAACCCGT
TTTCTTTCTTCTTATTATTATCTCTCTCTTCGCCCATTTATACTTGTTTT
ATTATCTTAATTACTCTTCTCCTCCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_l01.b1 MSMg01no380_l01.b1 CHROMAT_FILE:
MSMg01no380_l01.b1 PHD_FILE: MSMg01no380_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:50 2005
         (375 letters)



>mm_chr3_124475041_124475815
          Length = 775

 Score =  578 bits (299), Expect = e-169
 Identities = 350/367 (95%), Gaps = 1/367 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattccgagtaaccagctaagttgttctctctatgaagaaatgttgcaaataatt 64
           ||||| |||||||| ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattgattccgaggaaggagctaagttgttctctctatgaagaaatgttgcaaataatt 265

                                                                       
Query: 65  atccatgtgcttttgtggtctttttttttctatcataattacacaactctttccctttcc 124
           | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acccatgtgcttttgtgttctttttttttctatcataattacacaactctttccctttcc 325

                                                                       
Query: 125 tttttttcaaatcctctcatacaaccctctttgctcataatcaaattcatggtctctctt 184
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 326 -ttttttcaaatcctctcatacaaccctctttgctcatgatcaaattcatggtctctctt 384

                                                                       
Query: 185 ttcattatttgtagctacacatatgtatgttgtatatgtgtatatatttgtaagtatatg 244
           |||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| ||||
Sbjct: 385 ttcattatttgtagctacacgtatgaatgttgtatatgtgtatatatttataagtgtatg 444

                                                                       
Query: 245 ctattgcatatgctgtatatgtatgtataaatatgctcaaatgtctttgtattcctaaac 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 ctattgcatatgctgtatatgtatgtataaatatactcaaatgtctttgtattcctaaac 504

                                                                       
Query: 305 ttctcagaatgtatggtattacttatatgtgttttgtttgctggtatgagaatttggcat 364
           ||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct: 505 ttctcagaatgtatggtcttacttatatgtgttttgtttgccgggatgagaatttggcat 564

                  
Query: 365 tacataa 371
           | |||||
Sbjct: 565 tgcataa 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)