BAC Information

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BAC

Clone NameMSMg01-380N04
Chromosome3 (Build37)
Map Location 138,176,025 - 138,176,489
singlet/doubletsinglet
Overlap genenone
Upstream geneEG229862, Ddit4l, LOC668874, H2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925
Downstream geneEG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1, Tspan5, LOC620771, Rap1gds1, EG229879, B930007M17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380N04.T7 (MSMg01no380_n04.b1)MSMg01-380N04.TJ (MSMg01no380_n04.g1)
ACCAG485108AG485109
length758774
length of high quality
(start - end)
453 (36 - 488)463 (67 - 529)
definitionCHROMAT_FILE: MSMg01no380_n04.b1 PHD_FILE: MSMg01no380_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:00 2005CHROMAT_FILE: MSMg01no380_n04.g1 PHD_FILE: MSMg01no380_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TTTTCTCTGAACTCCATTTTTAATGGGGTTATTTGAATTTCTGGAGTCCA
CCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCAGATTTA
GGATTGGTAAAAATCCTTTCCCAATCTGTTGGTGACCTTTTTGTCTTATT
GACAGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATT
TGTCAATTCTTGATCTTACAGCACAAGTCATTGCTGTTCTGTTTAGGAAT
TTTTCCCCTGTGTCCATATCTGCAAGGCTTTTCCCTACTTTCTCCTCTAT
TAATTTCAGTGTCTCTGGTCTTATGTGGAGGACTTTGATCCACTTAGACT
TCGATCCACTTGTACAAGGAGATAAGAATGTATCATCTTGCATTCTGCTA
CATGATAACTTCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTT
TTTCCACTGCATGGTTTTATTCTCCCTTGTTAAAGACCAAGTGACCATAG
GTACGTGTATTCATTTCTGGCTCTTCCATTCTATTCCACTGATCTACCTG
TTTGTCCCTGTCCCAATACCACGTTGTTTTTTTCCCCACTCGCTCCGCTC
CCATATTCTTACTGTCCCTGTTGTTGATTTCCCCCTTAAGCTTTTTTCTT
TTTTTAAATCAACTTTTTATCACCTCTCTTTTCTTCCTTCCTTCTCTTTT
TCCAATGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATCACTTAAGAAACAGCCGGAGAGGCGTGGCAAG
GCGGAGTGATGTAGCACTCGGAGGACCAAAAGCCTACGAGTTCACCACTT
CACATCTTACTTGCCCTGTGGGATTTGTTCCCCAATATAAGCCAGGATGC
TACAGCTTTCGGGCTCCACATCCCCCAGGATGTCAAGACTGAATCTGGCG
CAAAGGCAGACAACAGTCTGGGGTGCTACTGAGTGGCTCTGCTTCCCGAG
TTCTCTCTGAGCAGCGAGTATCCTGGAATTAAAGCAGCCTCGCTTGTACT
CGTAAGTCTGTAGGCTTTTAATAATTCATGGAAAATTAAAAAAAAACAGT
CTCCTCCCCCACAATAAGTAGAAATTATCAAAATTCACTTACAAATAACT
GTACTTTTTGGTAGACACAATTGAATTGTGATTTTTTTTTAAACCTATGA
TCAAAACCACATTTTATTTCTAAAAATTCTTGTCATTCCAACAGTGAAGG
TCTTTCTTAATATTACTTTGAAGAATGATAAATTACTGTGCCTCTTGCAA
GAATATGAAATTTTTTAACTCGGAACCCCACTCCCTTCCTTTTTATAGAT
TGTTCTCCGTAAAACTCCTTAAACTTTTCCCCCCTAAACTCCCTCACCCC
CAAAGTTTCGAAAAAATTCGTTCCCCGTAAATATTTTTCGTATCCACTCC
CCTCCTCCGTCAATCCCCTCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_n04.g1 MSMg01no380_n04.g1 CHROMAT_FILE:
MSMg01no380_n04.g1 PHD_FILE: MSMg01no380_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:00 2005
         (463 letters)



>mm_chr3_138175825_138176689
          Length = 865

 Score =  837 bits (433), Expect = 0.0
 Identities = 457/465 (98%), Gaps = 2/465 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcacttaagaaacagccggagaggcgtggcaaggcggagtgatgtagcactcggaggac 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 665 atcacttaagaaacagccggagaggcgtggcaaggcggagtgatttagcactcggaggac 606

                                                                       
Query: 61  caaaagcctacgagttcaccacttcacatcttacttgccctgtgggatttgttccccaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 caaaagcctacgagttcaccacttcacatcttacttgccctgtgggatttgttccccaat 546

                                                                       
Query: 121 ataagccaggatgctacagctttcgggctccacatcccccaggatgtcaagactgaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ataagccaggatgctacagctttcgggctccacatcccccaggatgtcaagactgaatct 486

                                                                       
Query: 181 ggcgcaaaggcagacaacagtctggggtgctactgagtggctctgcttcccgagttctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ggcgcaaaggcagacaacagtctggggtgctactgagtggctctgcttcccgagttctct 426

                                                                       
Query: 241 ctgagcagcgagtatcctggaattaaagcagcctcgcttgtactcgtaagtctgtaggct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctgagcagcgagtatcctggaattaaagcagcctcgcttgtactcgtaagtctgtaggct 366

                                                                       
Query: 301 tttaataattcatgg-aaaattaaaaaaaaacagtctcctcccccacaataagtagaaat 359
           ||||||||||||||| |||||| |||||||||||||||||| || | |||||||||||||
Sbjct: 365 tttaataattcatggaaaaatttaaaaaaaacagtctcctctccaataataagtagaaat 306

                                                                       
Query: 360 tatcaaaattcacttacaaataactgtactttttggtagacacaattgaattgtgatttt 419
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tatcaaaattcacttaaaaataactgtactttttggtagacacaattgaattgtgatttt 246

                                                        
Query: 420 ttttt-aaacctatgatcaaaaccacattttatttctaaaaattc 463
           ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tttttaaaacctatgatcaaaaccacattttatttctaaaaattc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 865
Length adjustment: 10
Effective length of query: 453
Effective length of database: 855
Effective search space:   387315
Effective search space used:   387315
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)