BAC Information

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BAC

Clone NameMSMg01-380N16
Chromosome3 (Build37)
Map Location 137,129,375 - 137,275,287
singlet/doubletdoublet
Overlap geneEG229862
Upstream genePpp3ca, LOC668870, LOC100039447, Emcn
Downstream geneDdit4l, LOC668874, H2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380N16.T7 (MSMg01no380_n16.b1)MSMg01-380N16.TJ (MSMg01no380_n16.g1)
ACCAG485132AG485133
length756765
length of high quality
(start - end)		493 (39 - 531)358 (68 - 425)
definitionCHROMAT_FILE: MSMg01no380_n16.b1 PHD_FILE: MSMg01no380_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:02 2005CHROMAT_FILE: MSMg01no380_n16.g1 PHD_FILE: MSMg01no380_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,129,375 - 137,129,864)(137,274,931 - 137,275,287)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
CGTCTAACCTAACTAAATTTTTCCCTTCTCTCTCCTCCTCCCCTTCCTGT
TTCTCCCCCTCCTCCTCCCCTTCTTCTCCCCTCTTTCTCCTTTGTCTTCC
ACACCCCCACTCCTCCTTTTCCTTCTTTCTTAGATATATGTTACAAAAAG
AGAGAGAAACAGCCAGGCTGACAAAGTCAGAACCCTTCTCCCAAGAAGCT
GAAGAGGAGGAAATGAATCAAATGACAAAATTATCTTCTTTTAAGAGATG
GGGATGGTGAGCTGACTCTGTAACTTTTTTGTCTTTTTTACATCTATTTG
GTAAACATTTTGAACATAGAAATAAGTGTTCTGGAAGCTGGAAGGAGATA
AGTACCATGCTATCAAGGATTGCTCCCCTATATCATACTTCCAAGGAAGC
TTTATGAGAACCCTGACTATAGCATTTATTTACCATAAAAGAAAATGGCC
AGAGAAACTGACCGAATACTATAATCCAATCTACCAAAAGGAGCACAGAG
AATGTATCCTGGATGATTTCCAGATGGCCCACTTGTGTGGCTTTTCGAGC
CAGCTTAAAAAACAGGAGAACTGACCCGATGTTTGGTTTTGAAAAAACCT
CGTTTGGCTAACCTGGTTGGTGGTAGGGAATGTATTCCGGGGCCCAAGTA
AAAATAAACCGGCTTTTAATACCCTGTGCCCTCCCAAAAAGCCTCCTTCT
TAAAAA

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTAGGTTATGGGTAAGGTTAAGCATAGATAAAGA
GCAAAACAAAAGGGGCCTTTCAGCATTCATCAAATCCCAGGGCTTGAGAG
AGGGCCAAGAGAGTGAGGGCAAGTTCCTGTCACCTGGGCTACCATGCTCA
TTCAGTTATACACTGGAGTTGACATTTAAAAACGTTGAGAGAAAAGATGA
GGACAGTTAATGATTGACTACCTAATAGGACCAGTTGACCCAGTGATTAA
GTAACCAACGGTATTCATTTCTGGAAGAAATCCAGCATTAGATAATTTTC
TAAAGATTTTTCTAAAACTTGACTTTGTAAAAGTAGGTCATCTCCCCTGC
CCCTGCCCCCCCACCCCACCTTCCTCTATGTCTCGCCCCACCCCCCATGC
ACTATGTCTCCTTCCCTAAAACGACATTTCTGTTCTACCCCGTATTGTTG
TTCTTTTTACCTCCTTCCTGTCACCCCCTTATCCGCTCCTTATTTCTCTT
ATCTTCGTGCCTTTCTGGGGTATTTTTTGGCCTCATTTCTCCCGTGCCAA
TAATCCCCCCTTTAATCCCCCCCCATCCTCTATTTTTTTATGATCTCTTC
CCTCTCTTTTCCAACTTTCCCTCCTTTCCCCTTTTTTTCCACCTCATCCT
TCTTCTTTTTCCTACCTCTCCTTCCTTTTTCTTTTTCCTCCCCCTCCCTC
TTATTCCCTCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_n16.b1 MSMg01no380_n16.b1 CHROMAT_FILE:
MSMg01no380_n16.b1 PHD_FILE: MSMg01no380_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:02 2005
         (493 letters)



>mm_chr3_137129172_137130064
          Length = 893

 Score =  870 bits (450), Expect = 0.0
 Identities = 480/490 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctcgtctaacctaactaaatttttcccttctctctcctcctccccttcctgtt 63
           |||||||||| || ||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 204 ggaattcctcatcaaacctaactaaatctttcccttctctctcctcctcctcttcctgtt 263

                                                                       
Query: 64  tctccccctcctcctccccttcttctcccctctttctcctttgtcttccacacccccact 123
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 264 tctccccctcctcctccccttcttctcccctctttctcctttgttttccacacccccact 323

                                                                       
Query: 124 cctccttttccttctttcttagatatatgttacaaaaagagagagaaacagccaggctga 183
           |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 324 cctccttttccttctttcttagatatatgttacaaaaacagagagaaaaagccaggctga 383

                                                                       
Query: 184 caaagtcagaacccttctcccaagaagctgaagaggaggaaatgaatcaaatgacaaaat 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 384 caaagtcagaacccttctcccaagaagctgaagaggaggaaatgaatcaaatgagaaaat 443

                                                                       
Query: 244 tatcttcttttaagagatggggatggtgagctgactctgtaacttttttgtcttttttac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tatcttcttttaagagatggggatggtgagctgactctgtaacttttttgtcttttttac 503

                                                                       
Query: 304 atctatttggtaaacattttgaacatagaaataagtgttctggaagctggaaggagataa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atctatttggtaaacattttgaacatagaaataagtgttctggaagctggaaggagataa 563

                                                                       
Query: 364 gtaccatgctatcaaggattgctcccctatatcatacttccaaggaagctttatgagaac 423
           |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 564 gtaccatgctatcaaggattgctcacctatatcatactttcaaggaagctttatgagaac 623

                                                                       
Query: 424 cctgactatagcatttatttaccataaaagaaaatggccagagaaactgaccgaatacta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cctgactatagcatttatttaccataaaagaaaatggccagagaaactgaccgaatacta 683

                     
Query: 484 taatccaatc 493
           ||||||||||
Sbjct: 684 taatccaatc 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no380_n16.g1 MSMg01no380_n16.g1 CHROMAT_FILE:
MSMg01no380_n16.g1 PHD_FILE: MSMg01no380_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:02 2005
         (358 letters)



>mm_chr3_137274731_137275488
          Length = 758

 Score =  659 bits (341), Expect = 0.0
 Identities = 353/357 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggttatgggtaaggttaagcatagataaagagcaaaacaaaaggggcctttcagcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 taggttatgggtaaggttaagcatagataaagagcaaaacaaaaggggcctttcagcatt 498

                                                                       
Query: 61  catcaaatcccagggcttgagagagggccaagagagtgagggcaagttcctgtcacctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 catcaaatcccagggcttgagagagggccaagagagtgagggcaagttcctgtcacctgg 438

                                                                       
Query: 121 gctaccatgctcattcagttatacactggagttgacatttaaaaacgttgagagaaaaga 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 437 gctaccatgctcattcagttatacactggagttgacatttaaaaacattgagagaaaaga 378

                                                                       
Query: 181 tgaggacagttaatgattgactacctaataggaccagttgacccagtgattaagtaacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgaggacagttaatgattgactacctaataggaccagttgacccagtgattaagtaacca 318

                                                                       
Query: 241 acggtattcatttctggaagaaatccagcattagataattttctaaagatttttctaaaa 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 acgggattcatttctggaagaaatccagcattagataattttctaaagatttttctaaaa 258

                                                                    
Query: 301 cttgactttgtaaaagtaggtcatctcccctgcccctgcccccccaccccaccttcc 357
           ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 257 cttgactttgtaaaagtaggtcatctcccctgcccctgcccccgcaccccatcttcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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