XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
TAATTGTCTGTAGTTCTTTCTTTGTATAGGGCTGAGGCCTTGTAAGATCT
CTTCCATCACATTTGCCTGCCTACTTATTCAACACAGTTTATGCAGACCA
TGCTGGTGTAATGTAATAAGTATAGCTTCAGGTATTACTAGGAGACACAT
TTTCACAGCACAAAGTTCTTTCTGAGTTTTTGGCTCTTAGACTCTTATTT
TCTTAGAACCCAAGATAGGCCACAGACCACAGAACAAAGAAATAGTTCCA
GTTAGTTCTATCTTAGTGAACAAATGAATTTACTGTGGTCATTTGTAGCA
ATATGTATAGCTTAACTTAAAGGTACATAGATAAATCAGAGGCTCCAAGC
ACACAAGTCTGTACCCCTGAAGATAATCAACGACATTTGACCTAATGTTG
AAAAAGTCCACCAGGTCATTGGAAATAATAACAGGTCAAAATTGAAGGAA
AATGTACCAACTGTTGATACTATAGTTATATTTACCTATTCATTAACCTC
TTTTGGAAAGGACATGTTTTCTCAGCAGACAGACTACAAGCAGAGATCAC
CAGAATGCTTTTTATACCATCAACGTCATCACCATCATCACCATCACCAG
GATTACGATCATCATGATCATGATCAGATATTTGACTATTTGCTAGAAGA
GAACAGTGTATGGGACAGCCCTACTGCATTTCCTGTAAGG

TGGAGAAGACTGGCGCCGCCTGTTCGACAATTTAGGTGACCTATAGATTT
TTCTGAGAAATTCTTTCAGAAATCAGAAATCACAACAAAAAAATTTGGGA
GATAATGAATAATCCCCTCATAGAAAGTCAGAAAAACACAATTATGAAGA
AACGAATATATTTCCTTAAAGAAAGTCAAACTTTTTCATCATAAAATTTT
GCAAAAGTCATTTTATCCTAACTCTAAGAACTTCATTTTCAATATTTATA
TTAGGGAGAAAACATCCAACTATGACAAACTTTCTCCAACCATATTGGCC
CCATCCCAACTTGGTAAAGTGAAAACATAAAAAATTTATTTATAGTTCCT
ATAAAACCTTTTTTGGAATAACCAAAATAATTAATCTTCTTATATTCGAA
CTCTCCTTTTCTTGTCCATTTACTTCACTTTTAACCTTATTTAAAAGAAA
TAATTTTTCTATTTAGGCTATTTTTTCCTTCATCTTTATTCTTTCCAAAG
TGCTTATTCCCCAATAATTCCCTCTTATAACTCATCTCCCCTCCCCCCAC
TTACTTTTATCCCACCCCACTTCCCATCTCTTCTTGGACCCCTGTGTTAT
TCTCTCTTCTACCTGAGTTTTATATAAACTTTTTTGTATATTACAACTGC
AACACTCTATTTTTTTGTTCGATTGTTTTGAACCATTACCAAACTTCGTT
TATATTGTTATGCTCTCCTCAGAGTATCTATTATTTTTAGAAGTTTCATG
CAACACCCGTCCTAACTGTTCTCACCACTTTACCGTATTGTTTGACTCCC
CTCTCAGCACTCTACACCTAATTCTCTTCCTCATAACTCCTACCCTATCA
GGTTGTCCTCTCGCGCCACCCTCCCTTAATATCATTCGTTATG

Query= MSMg01no380_o16.b1 MSMg01no380_o16.b1 CHROMAT_FILE:
MSMg01no380_o16.b1 PHD_FILE: MSMg01no380_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:08 2005
         (651 letters)



>mm_chr3_77049867_77050923
          Length = 1057

 Score = 1129 bits (584), Expect = 0.0
 Identities = 639/670 (95%), Gaps = 24/670 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctataattgtctgtagttctttctttgtatagggctgaggccttgtaagatctct 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 803 gaattctataattgtctgtagttctttctttgtatagggctgaggccttgtacgatctct 744

                                                                       
Query: 65  tccatcacatttgcctgcctacttattcaacacagtttatgcagaccatgctggtgtaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tccatcacatttgcctgcctacttattcaacacagtttatgcagaccatgctggtgtaat 684

                                                                       
Query: 125 gtaataagtatagcttcaggtattactaggagacacattttcacagcacaaagttctttc 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 683 gtaataagtatagcttcaggtattactaggagacacattttcacaacacaaagttctttc 624

                                                                       
Query: 185 tgagtttttggctcttagactcttattttcttagaacccaagataggccacagaccacag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgagtttttggctcttagactcttattttcttagaacccaagataggccacagaccacag 564

                                                                       
Query: 245 aacaaagaaatagttccagttagttctatcttagtgaacaaatgaatttactgtggtcat 304
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aacaaagaaatagttccaattagttctatcttagtgaacaaatgaatttactgtggtcat 504

                                                                       
Query: 305 ttgtagcaatatgtatagcttaacttaaaggtacatagataaatcagaggct----c--c 358
           |||||||||||||||||||||||||||||||||||||||||||||| |||||    |  |
Sbjct: 503 ttgtagcaatatgtatagcttaacttaaaggtacatagataaatcaaaggcttgggctgc 444

                                                                       
Query: 359 aagcacacaagtctgtacccctgaagataatcaacga--------catttgacctaatgt 410
           ||||||||||||||||| ||||||||||||||||| |        |||||||||||||||
Sbjct: 443 aagcacacaagtctgtatccctgaagataatcaactatccaactacatttgacctaatgt 384

                                                                       
Query: 411 tgaaaaagtccaccaggtcattggaaataataacaggtcaaaattgaaggaaaatgtacc 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgaaaaagtccaccaggtcattggaaataataacaggtcaaaattgaaggaaaatgtacc 324

                                                                       
Query: 471 aactgttgatactatagttatatttacctattcattaacctcttttggaaaggacatgtt 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aactgttgatactatagttatatttacctattcattaacctcttttggaaaggacatgtt 264

                                                                       
Query: 531 ttctcagcagacagactacaagcagagatcaccagaatgctttttataccatcaacgtca 590
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 263 ttctcagcagacagactacaagcagagatcaccagaatgctttttataccatcaacatca 204

                                                                       
Query: 591 tca---------ccatcatcaccatcaccaggattacgatcatcatgatcatgatcagat 641
           |||         ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tcatcatcatcaccatcatcaccatcaccaggattacgatcatcatgatcatgatcagat 144

                     
Query: 642 atttgactat 651
           ||| ||||||
Sbjct: 143 att-gactat 135


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1057
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1047
Effective search space:   671127
Effective search space used:   671127
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)