MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-381B09
Chromosome	3 (Build37)
Map Location	31,851,495 - 31,851,765
singlet/doublet	singlet
Overlap gene	Kcnmb2
Upstream gene	Phc3, LOC100040809, Prkci, Skil, Cldn11, Slc7a14, LOC625125
Downstream gene	LOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13, Pex2
Link	Open Mouse BAC browser

Click to get alignment info.

name	Phc3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:241915 MGI:2181434
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040809 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040809
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Prkci (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18759 MGI:99260
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Skil (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20482 MGI:106203
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Cldn11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18417 MGI:106925
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc7a14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:241919 MGI:3040688
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC625125 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:625125
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein pseudo : _no_value

name	Kcnmb2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72413 MGI:1919663
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665514 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665514
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Zmat3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22401 MGI:1195270
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930429B21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67576 MGI:1914826
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 8 ESTs

name	Pik3ca (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18706 MGI:1206581
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kcnmb3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:435726 MGI:3612244
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins

name	Zfp639 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67778 MGI:1915028
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mfn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67414 MGI:1914664
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gnb4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14696 MGI:104581
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040977 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040977
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Actl6a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56456 MGI:1861453
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mrpl47 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74600 MGI:1921850
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ndufb5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66046 MGI:1913296
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Usp13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72607 MGI:1919857
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pex2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:58869 MGI:1916672
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Phc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:24025667 GeneID:241915 MGI:2181434
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : polyhomeotic-like 3 (Drosophila) transcript_id : NM_153421.1

name	Prkci (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133778988 GeneID:18759 MGI:99260
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase C, iota transcript_id : NM_008857.3

name	Skil (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84875516 GeneID:20482 MGI:106203
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SKI-like transcript_id : NM_011386.2

name	Skil (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84875519 GeneID:20482 MGI:106203
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SKI-like transcript_id : NM_001039090.1

name	Cldn11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130649 GeneID:18417 MGI:106925
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : claudin 11 transcript_id : NM_008770.2

name	Slc7a14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254250 GeneID:241919 MGI:3040688
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 7 (cationic amino acid transporter, y+ system), member 14 transcript_id : NM_172861.2

name	Kcnmb2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560079 GeneID:72413 MGI:1919663
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium large conductance calcium-activated channel, subfamily M, beta member 2 transcript_id : NM_028231.2

name	Zmat3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:101943565 GeneID:22401 MGI:1195270
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger matrin type 3 transcript_id : NM_009517.2

name	Pik3ca (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679316 GeneID:18706 MGI:1206581
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidylinositol 3-kinase, catalytic, alpha polypeptide transcript_id : NM_008839.1

name	Kcnmb3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149250873 GeneID:435726 MGI:3612244
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins product : potassium large conductance calcium-activated channel, subfamily M, beta member 3 transcript_id : XM_001475546.1

name	Zfp639 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803090 GeneID:67778 MGI:1915028
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 639 transcript_id : NM_144519.3

name	Mfn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142351556 GeneID:67414 MGI:1914664
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitofusin 1 transcript_id : NM_024200.3

name	Gnb4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31542898 GeneID:14696 MGI:104581
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : guanine nucleotide binding protein, beta 4 transcript_id : NM_013531.2

name	LOC100040977 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250875 GeneID:100040977
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100040977 transcript_id : XM_001475592.1

name	Actl6a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9789892 GeneID:56456 MGI:1861453
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : actin-like 6A transcript_id : NM_019673.1

name	Mrpl47 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:29826331 GeneID:74600 MGI:1921850
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial ribosomal protein L47 transcript_id : NM_029017.1

name	Ndufb5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27754143 GeneID:66046 MGI:1913296
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5 transcript_id : NM_025316.2

name	Usp13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131141 GeneID:72607 MGI:1919857
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin specific peptidase 13 (isopeptidase T-3) transcript_id : NM_001013024.2

name	Pex2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372154 GeneID:58869 MGI:1916672
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : peroxin 2 transcript_id : NM_021483.2

name	Phc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:24025668 CCDS:CCDS17288.1 GeneID:241915 MGI:2181434
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007275 - development [Evidence IEA] codon_start : 1 exception : mismatches in translation function : developmental regulator note : polyhomeotic 3 product : polyhomeotic-like 3 protein_id : NP_700470.1

name	Prkci (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:133778989 CCDS:CCDS17289.1 GeneID:18759 MGI:99260
definition	GO_component : GO:0045177 - apical part of cell [Evidence IDA]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0005829 - cytosol [Evidence ISS]; GO:0005634 - nucleus [Evidence ISS]; GO:0000133 - polarisome [Evidence ISS] GO_function : GO:0005524 - ATP binding [Evidence ISS] [Evidence IEA]; GO:0004700 - atypical protein kinase C activity [Evidence IEA] [Evidence ISS]; GO:0019992 - diacylglycerol binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005543 - phospholipid binding [Evidence ISS]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007015 - actin filament organization [Evidence IMP]; GO:0007010 - cytoskeleton organization and biogenesis [Evidence ISS]; GO:0045197 - establishment and/or maintenance of epithelial cell polarity [Evidence ISS]; GO:0035089 - establishment of apical/basal cell polarity [Evidence IMP]; GO:0042462 - eye photoreceptor cell development [Evidence IMP]; GO:0045216 - intercellular junction assembly and maintenance [Evidence ISS]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0016044 - membrane organization and biogenesis [Evidence ISS]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0006612 - protein targeting to membrane [Evidence ISS]; GO:0046903 - secretion [Evidence ISS]; GO:0016192 - vesicle-mediated transport [Evidence ISS] codon_start : 1 note : protein kinase C, lambda product : protein kinase C, iota protein_id : NP_032883.2

name	Skil (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84875517 GeneID:20482 MGI:106203
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; ski/sno related product : SKI-like isoform a protein_id : NP_035516.2

name	Skil (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84875520 GeneID:20482 MGI:106203
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2; ski/sno related product : SKI-like isoform b protein_id : NP_001034179.1

name	Cldn11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679186 CCDS:CCDS17290.1 GeneID:18417 MGI:106925
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence TAS]; GO:0016020 - membrane [Evidence IEA]; GO:0005923 - tight junction [Evidence TAS] [Evidence ISS] GO_function : GO:0042802 - identical protein binding [Evidence ISS]; GO:0005515 - protein binding [Evidence IPI]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0008366 - axon ensheathment [Evidence IMP]; GO:0016338 - calcium-independent cell-cell adhesion [Evidence ISS]; GO:0007155 - cell adhesion [Evidence IMP]; GO:0007283 - spermatogenesis [Evidence IMP] codon_start : 1 note : oligodendrocyte transmembrane protein; oligodendrocyte-specific protein product : claudin 11 protein_id : NP_032796.1

name	Slc7a14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370304 CCDS:CCDS17291.1 GeneID:241919 MGI:3040688
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005279 - amino acid-polyamine transporter activity [Evidence IEA] GO_process : GO:0006865 - amino acid transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : solute carrier family 7, member 14 protein_id : NP_766449.1

name	Kcnmb2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312300 CCDS:CCDS17292.1 GeneID:72413 MGI:1919663
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0015269 - calcium-activated potassium channel activity [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006813 - potassium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : potassium large conductance calcium-activated channel, subfamily M, beta member 2 protein_id : NP_082507.1

name	Zmat3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:101943566 CCDS:CCDS17293.1 GeneID:22401 MGI:1195270
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030308 - negative regulation of cell growth [Evidence TAS]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : wild-type p53-induced gene 1 protein_id : NP_033543.2

name	Pik3ca (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679317 GeneID:18706 MGI:1206581
definition	GO_component : GO:0030027 - lamellipodium [Evidence IDA]; GO:0005942 - phosphoinositide 3-kinase complex [Evidence IPI] GO_function : GO:0004428 - inositol or phosphatidylinositol kinase activity [Evidence IEA]; GO:0043560 - insulin receptor substrate binding [Evidence IPI]; GO:0016301 - kinase activity [Evidence IEA]; GO:0016303 - phosphatidylinositol 3-kinase activity [Evidence IDA]; GO:0046934 - phosphatidylinositol-4,5-bisphosphate 3-kinase activity [Evidence IEA]; GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006916 - anti-apoptosis [Evidence IMP]; GO:0006006 - glucose metabolism [Evidence IMP]; GO:0043066 - negative regulation of apoptosis [Evidence IDA]; GO:0006468 - protein amino acid phosphorylation [Evidence IDA]; GO:0043491 - protein kinase B signaling cascade [Evidence IMP]; GO:0040014 - regulation of body size [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation product : phosphatidylinositol 3-kinase, catalytic, alpha polypeptide protein_id : NP_032865.1

name	Kcnmb3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149250874 GeneID:435726 MGI:3612244
definition	codon_start : 1 product : similar to calcium-activated potassium channel beta 3 subunit protein_id : XP_001475596.1

name	Zfp639 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21362299 CCDS:CCDS17295.1 GeneID:67778 MGI:1915028
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : zinc finger protein 639 protein_id : NP_653102.1

name	Mfn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29789169 CCDS:CCDS17296.1 GeneID:67414 MGI:1914664
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005741 - mitochondrial outer membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IEA]; GO:0019867 - outer membrane [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007275 - development [Evidence IEA]; GO:0008053 - mitochondrial fusion [Evidence IMP] codon_start : 1 exception : mismatches in translation product : mitofusin 1 protein_id : NP_077162.1

name	Gnb4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542899 CCDS:CCDS17297.1 GeneID:14696 MGI:104581
definition	GO_component : GO:0005834 - heterotrimeric G-protein complex [Evidence ISS] GO_function : GO:0003924 - GTPase activity [Evidence ISS]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0005083 - small GTPase regulator activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence TAS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : guanine nucleotide-binding protein, beta-4 subunit protein_id : NP_038559.2

name	LOC100040977 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250876 GeneID:100040977
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475642.1

name	Actl6a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9789893 CCDS:CCDS17298.1 GeneID:56456 MGI:1861453
definition	GO_component : GO:0005884 - actin filament [Evidence IEA]; GO:0016585 - chromatin remodeling complex [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003682 - chromatin binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0005200 - structural constituent of cytoskeleton [Evidence IEA] GO_process : GO:0016568 - chromatin modification [Evidence IEA]; GO:0006338 - chromatin remodeling [Evidence IDA]; GO:0001558 - regulation of cell growth [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : actin-like 6 product : BRG1/brm-associated factor 53A protein_id : NP_062647.1

name	Mrpl47 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29826332 CCDS:CCDS17299.1 GeneID:74600 MGI:1921850
definition	GO_component : GO:0005761 - mitochondrial ribosome [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0003735 - structural constituent of ribosome [Evidence IEA] GO_process : GO:0006412 - protein biosynthesis [Evidence IEA] codon_start : 1 note : metanephros-derived tubulogenic factor product : mitochondrial ribosomal protein L47 protein_id : NP_083293.1

name	Ndufb5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27754144 CCDS:CCDS17300.1 GeneID:66046 MGI:1913296
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]; GO:0003954 - NADH dehydrogenase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] codon_start : 1 product : NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5 protein_id : NP_079592.2

name	Usp13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:61316410 CCDS:CCDS17301.1 GeneID:72607 MGI:1919857
definition	GO_function : GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO:0004221 - ubiquitin thiolesterase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IEA] codon_start : 1 product : ubiquitin specific protease 13 (isopeptidase T-3) protein_id : NP_001013042.1

name	Pex2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946890 CCDS:CCDS17302.1 GeneID:58869 MGI:1916672
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation note : peroxisomal targeting signal 1 receptor-like product : peroxin 2 protein_id : NP_067458.1

name	LOC100040809 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040809
definition	number : 1 pseudo : _no_value

name	LOC100040809 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040809
definition	number : 2 pseudo : _no_value

name	LOC665514 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665514
definition	number : 1 pseudo : _no_value

name	LOC665514 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665514
definition	number : 2 pseudo : _no_value

name	LOC625125 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149250832 GeneID:625125
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein product : hypothetical LOC625125 pseudo : _no_value transcript_id : XR_031683.1

name	4930429B21Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149250872 GeneID:67576 MGI:1914826
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 8 ESTs product : RIKEN cDNA 4930429B21 gene transcript_id : XR_035269.1

clone name	MSMg01-102K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-400K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517K22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231L21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423K24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-446P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-172A09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-527P05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-103M21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-084P02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-159E21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-543H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-113E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-165G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-348M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381B09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-123H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-312D24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-275G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402K24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-102E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-272D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-196I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-091P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423C04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-369K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085G01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-099N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318B22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-053P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185F06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-343I01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-087H12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175H21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246C10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114E05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230O07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262E08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-093M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198E13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-278M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329P12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-267O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135I09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-321E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302E05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282B05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-169D12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325I19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101D13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307G07
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-381B09.T7 (MSMg01no381_b09.b1)	MSMg01-381B09.TJ (MSMg01no381_b09.g1)
ACC	AG485309	AG485310
length	773	807
length of high quality (start - end)	270 (43 - 312)	289 (75 - 363)
definition	CHROMAT_FILE: MSMg01no381_b09.b1 PHD_FILE: MSMg01no381_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:22 2005	CHROMAT_FILE: MSMg01no381_b09.g1 PHD_FILE: MSMg01no381_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:22 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TTTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCT TTTGTTCTAGAAACTAACATATATCACCTATTTCCTTCTTCATTGTACTA CTGGGAAATCTCAGGAAAGGTAGTTACTTTCTTTATGATCACACTCCTTT TTATTTATATTTTTGCAATAAAGATAATGTGTAACCAGGACCATTTCTGT ATAATCTTACTTTATAAATACAATTTCTGTCTAGTTCTTGCAAGTGTGTC ATGCAAACAGAATCATATCCAAGTCTTCCTGGCTTGGCAGAAACATGCAA AGTGTGTACAGGATTATGAAAGATGATTCTCCAAGGCCAGCTTCATTACC CACTAGCCTGGATCAATTATTTCCGTATGTATTTGTAGAACAGATGAAAG ACTTAACCCAACATTTCTTGTGTTCCCCTTTTCTGATTTTGTAGGATCTC GTTTCCCGCTTGCCAATTCTCCCCATTCCTTCCCCTTTTTCTTTCCCCCC CCCCCCCCCCCCTTTTTTTTCCTTTCCCCCCCCCCTTTTTTATTCCCTTC CCCTCCCTCCCTTTTTTCCCCCCCCCCTCTCTCTTTCTTTTCCCTTTTTT CCCTCTTTTTCCCCCACTTCCTTTACCCCTACCCCCCTTTCTTCCCCTTT TTTTTCCTCCTTTCTTATTCTTTTTTTTCTTCCCCTTTTTTTTTTTCCCC CTCCCCCCCCCCCCCATTTATCAACTCTCTTTTTTTTCCTCCTCTCTTCT CCCCCCTTTTTTCTTTCTTTTTT	AATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXCCCTGGTGCAGGTTTTTTCACTAGGC CTAGAGGAATAGCATAAGCAGGTATTTATTAAAGGACCCCTGGTGGTAGG TTTAACAAGAGACTAACATTGCATCAGGGCATTCACCTGCCTCCTGTGTT TAGCTGATCTTAATTAAGGGTTGTTCCTATTCTCAGTTGTAAACATAGCC TGGCTCCTACCATCTTTTTATGTATGCATTTTCTTTGTTTTGTGTAAAGA ACCAGTGTACCTTAGCGGATATATTCTCGTAGCTTTGTTATTTTTCTTCT GTATTATAAGACTGGCGCTCACTTTGAGAAAAATACATTCAGATACACCC TCTCTCTGTGTCCGCCCCCGCCTGTCACCCATCTGTGCTAACTCCTTGCT TGCTTGTTTCCGTTAACCTTTTTTTCCTCGCGGTTTTTTTTTTCTCCCTG CCCTTTTGTCCCCCTATCCTTTGCCTCTTTTTTTATTTTTCCTGCCCTTT CCATTTATTCCTGTTTCCCTTCTTTTCCTTTTCCCCTCCCTCCTCCCTTC TCCCCTCCTTCTCTTTTTCCTTTCTTTTCTCTCCCCTTTTTTTTCCCTCC CCGCCGCCCTTTTCTTTTCTACTTTTTTTTCCCCTTTTTCCCCCCCCCTC CCTTTTTTTCTCCTTCCTTTCCCATCCCCCGTCTCATTTTTTTACTCCTT CTCTTCCCTATTTTTTTTCCCCGCTTCTCTTTATGTTCCTCCTTTCCTTT CCTTTCN
quality values	Open. Hide. 10 10 8 8 12 12 12 13 11 12 12 12 18 19 28 37 32 30 24 33 17 17 9 9 9 9 9 10 11 9 9 12 11 12 10 13 13 23 22 28 13 12 15 21 23 37 39 43 46 59 41 34 19 13 13 11 11 11 11 18 18 36 36 40 48 33 36 36 36 47 47 57 36 37 36 36 36 43 59 59 59 59 59 59 59 59 59 59 29 19 14 14 24 24 48 48 57 54 46 48 37 30 24 24 24 21 32 32 47 47 42 32 27 19 19 20 34 38 41 41 41 41 41 41 47 57 57 57 50 51 48 48 48 57 57 47 47 37 50 37 47 41 50 43 43 43 43 37 41 35 37 37 43 50 57 57 57 57 57 57 57 57 57 52 52 43 52 50 59 59 59 57 57 52 52 52 57 57 38 38 14 14 12 27 18 16 12 11 11 13 21 36 57 57 57 57 52 43 43 37 37 43 50 52 57 52 43 43 50 50 57 57 44 44 35 35 33 35 38 43 27 27 29 43 43 47 43 50 43 44 43 42 42 33 33 42 44 41 30 15 15 19 24 23 25 14 23 14 18 32 24 28 32 42 42 43 32 32 14 14 14 28 28 46 46 54 57 44 44 27 27 18 19 19 28 34 43 54 35 32 18 18 18 25 27 13 13 13 18 18 13 18 18 37 34 39 39 30 24 18 15 14 14 18 28 28 28 28 15 17 8 8 8 8 8 8 12 16 12 15 12 19 21 30 30 37 43 43 37 32 24 20 20 18 19 20 19 16 13 10 10 10 17 26 39 43 43 40 39 39 23 19 9 9 9 9 10 25 25 25 25 18 23 10 10 10 10 10 8 15 15 24 22 17 18 20 18 25 25 23 25 24 9 8 6 6 8 8 10 16 18 17 20 28 32 32 18 17 17 17 15 24 19 13 12 10 8 8 10 9 9 9 12 12 12 12 11 11 11 15 11 11 11 23 18 17 19 15 25 13 11 11 15 13 12 14 13 10 7 7 6 6 8 8 11 9 15 9 9 9 10 10 11 11 7 7 6 6 6 8 10 9 9 10 9 9 8 8 7 8 13 8 10 9 8 8 10 10 10 10 10 11 11 10 11 13 12 12 8 8 10 17 12 12 12 19 16 24 20 22 32 22 15 14 11 9 10 12 14 14 18 22 21 22 14 10 10 8 8 8 8 9 10 14 11 11 11 15 27 34 37 27 30 29 17 12 10 10 11 19 9 9 9 11 9 10 9 8 8 10 8 8 9 8 8 8 8 10 9 14 24 32 25 27 11 10 10 13 16 15 22 28 29 22 18 10 9 8 8 8 8 8 13 9 8 8 8 8 9 9 8 10 8 15 8 8 8 9 9 9 9 9 12 10 10 9 9 11 21 19 12 12 11 10 9 9 9 11 10 10 10 10 17 10 10 9 10 8 8 7 7 8 8 10 11 11 11 19 21 11 11 12 11 12 10 14 16 14 15 35 37 41 31 31 32 25 25 30 34 23 11 11 14 13 8 6 6 6 8 8 14 15 13 15 12 12 12 13 14 12 14 21 19 18 14 11 12 16 9 9 9 9 9 14 18 28 19 17 16 9 9 9 9 13 15 25 25 25 25 24 28 34 17 7 6 6 6 13 6 8 8 8 8 8 8 8 8 8 8 8 8 17 20 22 22 27 20 25 12 12 11 12 13 11 11 9 8 8 8 17 17 18 24 20 15 15 17 14 16 12 12 10 10 8 11 8 8 8 11 15 14 18 18	Open. Hide. 8 8 8 8 11 10 9 15 9 9 9 10 11 18 27 37 37 39 32 31 37 37 37 32 39 44 44 39 30 19 19 9 9 9 8 8 8 8 12 12 20 19 34 30 30 39 37 47 47 39 39 47 47 53 53 53 57 43 34 23 12 14 12 12 11 16 16 11 9 9 19 19 41 41 59 59 57 57 47 59 48 68 68 68 68 68 68 68 68 68 51 51 50 50 50 51 57 68 68 68 68 68 68 68 68 68 51 51 50 50 50 50 68 68 68 68 68 68 68 68 68 57 57 57 57 57 68 68 57 68 57 59 59 57 57 68 68 68 68 68 68 68 68 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 59 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 54 46 48 48 43 43 43 43 54 57 57 57 57 57 43 43 35 30 36 30 35 39 43 48 43 27 17 10 10 10 23 26 39 47 40 25 23 12 12 11 11 11 15 23 25 47 59 37 37 35 28 41 23 23 25 36 28 36 39 43 43 32 32 30 43 42 48 43 43 34 37 23 23 20 26 21 10 10 10 10 14 19 10 12 12 14 26 24 24 17 25 40 37 39 43 43 43 43 36 36 26 30 17 17 14 30 18 18 10 19 9 9 9 14 19 30 36 32 28 30 28 28 28 21 24 9 8 8 8 8 15 10 10 9 12 13 15 14 13 12 8 8 10 10 10 23 16 14 15 19 10 8 8 8 10 8 10 10 10 14 13 15 9 8 8 10 17 8 8 10 13 10 8 8 8 8 8 10 8 10 10 10 11 16 11 13 13 11 11 8 8 8 8 6 6 8 8 10 11 10 10 10 11 13 18 15 13 10 10 10 15 11 12 11 10 11 11 13 13 6 6 6 8 8 9 8 8 8 8 8 8 8 8 8 8 9 11 15 8 8 8 8 8 10 12 12 8 8 8 12 13 15 15 8 8 8 11 8 11 10 12 10 11 9 8 8 8 9 10 10 10 9 10 8 6 6 6 6 6 8 8 10 18 19 28 19 13 8 6 8 8 8 8 10 10 18 15 13 8 9 9 9 12 8 10 8 8 8 8 8 8 6 8 7 7 8 13 15 13 8 8 8 8 15 10 13 15 22 8 8 8 8 8 8 8 6 7 6 7 7 9 10 10 10 10 8 8 8 9 9 11 11 20 25 25 30 25 24 13 10 12 10 8 11 8 8 8 6 6 6 10 12 10 10 14 16 18 21 21 15 15 8 8 8 8 8 10 10 15 14 14 14 10 13 11 12 12 12 19 13 11 9 10 9 11 11 11 11 11 10 10 10 12 13 21 17 20 20 18 11 9 8 8 8 8 8 8 8 9 10 13 13 10 8 8 8 8 8 8 8 8 14 10 10 10 9 9 11 11 11 16 12 14 15 10 10 8 8 8 8 10 8 8 8 8 6 8 6 7 8 8 11 11 12 24 23 31 23 21 13 11 12 12 12 6 6 6 6 8 8 8 12 15 8 8 8 8 8 12 24 15 12 12 11 17 15 18 14 18 18 13 9 9 9 8 15 18 12 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no381_b09.b1 MSMg01no381_b09.b1 CHROMAT_FILE:
MSMg01no381_b09.b1 PHD_FILE: MSMg01no381_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:22 2005
         (270 letters)



>mm_chr3_31851295_31851965
          Length = 671

 Score =  464 bits (240), Expect = e-135
 Identities = 264/272 (97%), Gaps = 3/272 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattctcttttgt-tctagaaactaacatatatcacctatttccttcttca-ttgtacta 58
           ||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 471 aattctcttttgtatgtagaaactaacatatatcacctatttccttcttcagttgtacta 412

                                                                       
Query: 59  ctgggaaatctcaggaaaggtagttactttctttatgatcacactcctttttatttatat 118
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 411 ctgggaaatctcaggaaaggtagttactttctttatgatcacactcttttttatttatat 352

                                                                       
Query: 119 ttttgcaataaagataatgtgtaaccaggaccatttctgtataatcttactttataaata 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttttgcaataaagataatgtgtaaccaggaccatttctgtataatcttactttataaata 292

                                                                       
Query: 179 caatttctgtctagttcttgcaagtgtgtcatgcaaacagaatcatatccaagtcttcct 238
           |||||||||||||||||||  ||||||| |||| ||||||||||||||||||||||||||
Sbjct: 291 caatttctgtctagttcttataagtgtg-catgtaaacagaatcatatccaagtcttcct 233

                                           
Query: 239 ggcttggcagaaacatgcaaagtgtgtacagg 270
           ||||||||||||||||||||||||||||||||
Sbjct: 232 ggcttggcagaaacatgcaaagtgtgtacagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 671
Length adjustment: 9
Effective length of query: 261
Effective length of database: 662
Effective search space:   172782
Effective search space used:   172782
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information