TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCCTTT
TTTTCGGTTATTCTTGAATTCATTTACTTTTGACCACACAATGAAATCCC
AATTCCCCTGCAGGCTGCGGGGTCTTTGTTTCCTATTTTGTGCACTGTCT
ATCTCTCTGCATCTTTGAAGGAACAGCTGCAGAAGTCTCAGAAGCTCACA
AGTGCTTCTTCACGGTGGGCTATTACCATCGGAACCTAACTGGCTGATGA
TTTCTCAATCACCATTTTGCAGTTTCCTTTTTAGGGGACCGAAAAGCTAA
AGAAGAGGTTCGCTTTTTCTGAAAGTCATAGAAAGCATCTGGATTGTTGG
TGAGTGCCCTTTCAAGCAACAAAACTATTTCTGATCAATGGGACTATGAT
GTATGATGTCATAAACACCTAAAACATCTTCTCAGATCTATAAAATACTC
CTGTTGTCTAGGGGGAACCAGAAACCTTAAAGGCAAATGAAAAGATAAGT
GTATATCACCCAGTTAAATAGGGGATTACTAACCAAATACCAGAGAAGAG
TCCTATAAAGCAGCGAAAATACCAGCAGATTGCACAAATCCACATCCATC
CCCAAGGTTCATGGCACCCCGTTCAAAAGGCAAAACCACCAGCTCATCAT
TTGGGGTCCCATTACTCTCTCCTTAAAGGAACTTTGAGAAGTTATATCCT
TGGTCTTTGTTCCCCGGACTTGGCCCCTAAAAAAA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGAACTTCTTTGTCCTCCCCATTTTGGTA
CAGAGATTGCAAGAACCTGGTGCTAGAGTTGACTGTTTTGTTTTGTTTTG
TTTTGTTTTCTTGGAAGGCTCTGCTAAGAAACCAGCTTCATGGCTGGAGT
CTTGGCTGAACTGGTAAAGTGCCCTTTGCACAAGGATCACCATGTAAATC
CAGATCCCTGGACCCCGTGTAAAAGAAAAGAAAATCTGAGCATGGTCCTA
TATGACTGTGGTTGCAACCTTAGTGCAGGGCCTGCAGAGACAGGAGTGAT
CTCTGAAGCTTAGTCCCAGCCAGTCTAGGACCATGAGTGAGTACCAAGTT
TGGTGAGACACCCTGATTTAAAAGATAATGTGGAAATCAATAACAGAAAA
GAGCACCTATTGTGATCTGTATGTTTGTCTCTGTTTCTCTGCATGTATGT
GTCTCTCTTTGCCTGTCTCTGTCTCCCTGTCCCTCTCTCTGCTCTCTCTT
TATTTCTGTCTCTGTCTCTCTGCCTCTCTCTCTCTCTCTCTCTCTCTCTC
GCACATNCACACACTCATACACATACTCACACTTCCTCTCCCCTTANATA
TATATAAATATATATTTTTTCTATTTTTATANATTTCNCTTTTCTCCCTC
ATTTCCCTCCTTTTTCTCTTTTTTCCCTCCTCCTTTCCTTTCTTTCCCCC
TTTCCTTTTTTTTTTCTCCN

Query= MSMg01no381_g14.b1 MSMg01no381_g14.b1 CHROMAT_FILE:
MSMg01no381_g14.b1 PHD_FILE: MSMg01no381_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:48 2005
         (433 letters)



>mm_chr3_29070030_29070863
          Length = 834

 Score =  768 bits (397), Expect = 0.0
 Identities = 423/435 (97%), Gaps = 8/435 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcctttttttc----ggttattcttgaattcatttacttttgac-cacacaatgaa 58
           |||||||   |||||    ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 650 gaattcc---ttttcaagtggttattcttgaattcatttacttttgacacacacaatgaa 594

                                                                       
Query: 59  atcccaattcccctgcaggctgcggggtctttgtttcctattttgtgcactgtctatctc 118
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 593 atcccaattcccctgcaggctgcggggtctttgtttcctattttgtgcgctgtctatctc 534

                                                                       
Query: 119 tctgcatctttgaaggaacagctgcagaagtctcagaagctcacaagtgcttcttcacgg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 533 tctgcatctttgaaggaacagctgcagaagtctcagaagctcacaagtgcttcttcatgg 474

                                                                       
Query: 179 tgggctattaccatcggaacctaactggctgatgatttctcaatcaccattttgcagttt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tgggctattaccatcggaacctaactggctgatgatttctcaatcaccattttgcagttt 414

                                                                       
Query: 239 cctttttaggggaccgaaaagctaaagaagaggttcgctttttctgaaagtcatagaaag 298
           ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 413 cctttttaggggaccgaaaagctaaagaagaggctcgctttttctgaaagtcgtagaaag 354

                                                                       
Query: 299 catctggattgttggtgagtgccctttcaagcaacaaaactatttctgatcaatgggact 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 catctggattgttggtgagtgccctttcaagcaacaaaactatttctgatcaatgggact 294

                                                                       
Query: 359 atgatgtatgatgtcataaacacctaaaacatcttctcagatctataaaatactcctgtt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 atgatgtatgatgtcataaacacctaaaacatcttctcagatctataaaatactcctgtt 234

                          
Query: 419 gtctagggggaacca 433
           |||||||||||||||
Sbjct: 233 gtctagggggaacca 219


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 834
Length adjustment: 9
Effective length of query: 424
Effective length of database: 825
Effective search space:   349800
Effective search space used:   349800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)