Query= MSMg01no381_i23.b1 MSMg01no381_i23.b1 CHROMAT_FILE:
MSMg01no381_i23.b1 PHD_FILE: MSMg01no381_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:01 2005
(528 letters)
>mm_chr3_135280127_135281054
Length = 928
Score = 781 bits (404), Expect = 0.0
Identities = 454/490 (92%), Gaps = 35/490 (7%)
Strand = Plus / Minus
Query: 39 tcctccttaaactgttccataaagtagaaaggggaagaatatcaacaaacttattttcca 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 tcctccttaaactgttccataaagtagaaaggggaagaatatcaacaaacttattttcca 869
Query: 99 aagccagcattacttttatacccaaaccaggtaaaagaagaaaagaaaagaaaagaaaag 158
||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 868 aagccagcattacttttatacccaaaccaggtaaaag----------aagaaaagaaaag 819
Query: 159 aaaagaagagaagagaagagaagagaagagaagagaagagaaaagaaaagaaaagaaaag 218
|||||||||||| |||| || ||||||||||||||||||||||
Sbjct: 818 aaaagaagagaa------------------aaga-aa-agaaaagaaaagaaaagaaaag 779
Query: 219 aaaagaaaagaaaagaggaaggaaaggataagccgattcatacattcccaataaaataat 278
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 aaaag---agaaa--aggaaggaaaggataagccgattcatacattcccaataaaataat 724
Query: 279 agaatgaaatgaaaaatatacaaacgggaaaggaagagatgaaagagccctatccacaga 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 agaatgaaatgaaaaatatacaaacgggaaaggaagagatgaaagagccctatccacaga 664
Query: 339 caatattgtcccacacacaagagcccagggctgcactggagaggcttagctctgattgag 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 caatattgtcccacacacaagagcccagggctgcactggagaggcttagctctgattgag 604
Query: 399 gatcagcctgcgtcatcaccacacagaccccgtggttttcctatatcgatagtgagtgtg 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gatcagcctgcgtcatcaccacacagaccccgtggttttcctatatcgatagtgagtgtg 544
Query: 459 tcgagaaagaagtcagcaaacgcgatggccgagcacagtcacaggcatccccgatagctt 518
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 543 tcgagaaagaagtcagcaaacgcgacggccgagcacagtcacaggcatccccgatagctt 484
Query: 519 caacatgagc 528
||||||||||
Sbjct: 483 caacatgagc 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 10
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no381_i23.g1 MSMg01no381_i23.g1 CHROMAT_FILE:
MSMg01no381_i23.g1 PHD_FILE: MSMg01no381_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:01 2005
(489 letters)
>mm_chr3_135106660_135107548
Length = 889
Score = 907 bits (469), Expect = 0.0
Identities = 484/489 (98%)
Strand = Plus / Plus
Query: 1 tgaacttgcacttagaaacttctgatggagctgggcagtggtgcacacctttaatcccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaacttgcacttagaaacttctgatggagctgggcagtggtgcacacctttaatcccag 260
Query: 61 ggtgacagaggcacgtgtatctctgtaaattcaaggctagcctggtccacagagtgagtt 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgacagaggcatgtgtatctctgtaaattcaaggctagcctggtccacagagtgagtt 320
Query: 121 ccaaaacaacagaagaagcactgtctcaaaaaccaaaagaaaaagaaacctctttggggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaaaacaacagaagaagcactgtctcaaaaaccaaaagaaaaagaaacctctttggggt 380
Query: 181 taacttaatcggtatttcactggggttataattgcatttaagaaatcaagaatctctgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taacttaatcggtatttcactggggttataattgcatttaagaaatcaagaatctctgct 440
Query: 241 ttggttggaaaaagacatcaaacacagtatgtttattcctttgtacaacttattttcaaa 300
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 ttggttggaaaaatacatcaaacacagtatgtttattgctttgtacaacttattttcaaa 500
Query: 301 ggtttatcaaaattctgttaccctgtatctgaatagttttgtgagcttcttatgatctta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtttatcaaaattctgttaccctgtatctgaatagttttgtgagcttcttatgatctta 560
Query: 361 gttaaaatttcactagtgttaatgagtgcatttaatctcttaagtgtccagccaagtctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttaaaatttcactagtgttaatgagtgcatttaatctcttaagtgtccagccaagtctg 620
Query: 421 ccttaaattctaattttaaaactcctcaggcaactagtggagatgcatacacttaggtat 480
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 ccttaaattctaattttaaaactcctcaggcaactagtggagacacatacacttaggtat 680
Query: 481 ggcagtata 489
|||||||||
Sbjct: 681 ggcagtata 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
