XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAATCA
TTTATTTAAGTCCCAGAGTAAAGTACATTTTTAAAAGCCTCTCATTTATT
TCTATAGCAAAAATGTGTTGCTTCTCAGAAAATAGTCATAGTTACTAAAA
TAGAAATGGGGGACACAAGCTTACGTGGGGACAGCATCCTTGCATCAAAG
GAGCTTTTCTGCGAGTTTAATTTTTCTTTTCAAATTAATTCCTTTCATCT
TTAATGTTTTAAATTCATCATCTTATTTACTTGACAGTCGTTGAGTTCCT
GTTCTGCATTAGGCTTTATTCTATGCCTTAGAGATGTAAAATTAATGAGC
AATAAATTCTTCCCTGAAGGAACTCATTGATTAGAGGCAAAGATGGAGAC
GTGTGCTCAGATCTTACAAACTGATGTGCTCAGGCATTTTTAAGTGGGGT
TAAATGCACTGGAAACAATGAGATGAGGTCTTTACTCTCAGCTCTGCCCC
TAATTGTATAACCTTGGGCAAGTTACTTAATCTCTCTGAGATTGGCATCA
TCTGTAAAATTTAGGATGATGTTAGCTCCTGAAACTGCCAGCAACGTTGC
TTTAAGACCTAAATGAGACAATGTATTCAAAGCACTTAGCATGAANGGTG
GTGTAGCCTAGGCTCAGAGATAACTGCTGTGCACTGTGTTTCATTCAGCT
TACCTGCTTCTCCTTGGGAAGGGGGGGGCGTCAGAGGCTTCCCTCCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTGTTCAGCTCTGAGCCCCATTTTTTTATGAGGTTATTTGATTT
TCCCTTAGAGCTTTTAATATTCTATCTTTATTTAGTGCATTTGTTGTTTT
GATTATTATGTGTAGGGAGGAATTTCTTTTCTGGTCCAGACTATTTGGAG
TTCTGTAGGCTTCTTCTATGTTCATGAGCTTCTCTTTCTTTAGGTTTGGG
AAGTTTTCTTCTATAATTTTGTTGAAGATATTTGCTGGCCCTTTAAGTTG
AAAATCTTCATTCTCATCTACTCCTATTATCCATACGTTTGGTCTTCTCA
TTGTGTCCTTGATTTCCTGGATATTTTGAGTTAGGATCTTTTTGAATTTT
GTATTTTCTTTCATTGTTGTGCCCATGTTCTCTATGGAATCTTCTACACC
TGCGATTCTCTCTTCCATCTCTTGTATTCTGGTGCTGATGCTGGCATCTA
TGGTTCCAGATTTCTTTCCTAGGGTTTCTATCTCCAGCGTCACCTCACTT
TGGGGTTTCTTTATTGTGGCTACTTCCCTTTTATGCCAAGNAAGGTTTTG
GTCTTTTCCCCCCCTGGTTGGAAGAGGTTTCCAATTTTTTTTTGAGGCAT
CCAACTGTTGGATGGGGTGTCCCGGTTTTCTTTTATAATGGGAACCTTTT
CCAGGGGCCCCCGTGTTCTCTTATGAGGAATATAAAGTCCCTTTGAG

Query= MSMg01no382_e24.b1 MSMg01no382_e24.b1 CHROMAT_FILE:
MSMg01no382_e24.b1 PHD_FILE: MSMg01no382_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:01 2005
         (574 letters)



>mm_chr3_29412956_29413929
          Length = 974

 Score = 1094 bits (566), Expect = 0.0
 Identities = 569/570 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaatcatttatttaagtcccagagtaaagtacatttttaaaagcctctcattta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaatcatttatttaagtcccagagtaaagtacatttttaaaagcctctcattta 264

                                                                       
Query: 65  tttctatagcaaaaatgtgttgcttctcagaaaatagtcatagttactaaaatagaaatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttctatagcaaaaatgtgttgcttctcagaaaatagtcatagttactaaaatagaaatg 324

                                                                       
Query: 125 ggggacacaagcttacgtggggacagcatccttgcatcaaaggagcttttctgcgagttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggggacacaagcttacgtggggacagcatccttgcatcaaaggagcttttctgcgagttt 384

                                                                       
Query: 185 aatttttcttttcaaattaattcctttcatctttaatgttttaaattcatcatcttattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatttttcttttcaaattaattcctttcatctttaatgttttaaattcatcatcttattt 444

                                                                       
Query: 245 acttgacagtcgttgagttcctgttctgcattaggctttattctatgccttagagatgta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acttgacagtcgttgagttcctgttctgcattaggctttattctatgccttagagatgta 504

                                                                       
Query: 305 aaattaatgagcaataaattcttccctgaaggaactcattgattagaggcaaagatggag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaattaatgagcaataaattcttccctgaaggaactcattgattagaggcaaagatggag 564

                                                                       
Query: 365 acgtgtgctcagatcttacaaactgatgtgctcaggcatttttaagtggggttaaatgca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acgtgtgctcagatcttacaaactgatgtgctcaggcatttttaagtggggttaaatgca 624

                                                                       
Query: 425 ctggaaacaatgagatgaggtctttactctcagctctgcccctaattgtataaccttggg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctggaaacaatgagatgaggtctttactctcagctctgcccctaattgtataaccttggg 684

                                                                       
Query: 485 caagttacttaatctctctgagattggcatcatctgtaaaatttaggatgatgttagctc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caagttacttaatctctctgagattggcatcatctgtaaaatttaggatgatgttagctc 744

                                         
Query: 545 ctgaaactgccagcaacgttgctttaagac 574
           ||||||||||||||||||||||||| ||||
Sbjct: 745 ctgaaactgccagcaacgttgctttgagac 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)