Query= MSMg01no382_f03.b1 MSMg01no382_f03.b1 CHROMAT_FILE:
MSMg01no382_f03.b1 PHD_FILE: MSMg01no382_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:02 2005
(499 letters)
>mm_chr3_120917456_120918354
Length = 899
Score = 903 bits (467), Expect = 0.0
Identities = 487/495 (98%), Gaps = 3/495 (0%)
Strand = Plus / Minus
Query: 5 gaattccttggtcgtcagaggcatgtacctgtttacaccttcaccctgtacttctggctt 64
||||||||||| | ||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 689 gaattccttggccatcagaggcatgtacctgattacaccttcaccctggacttctggctt 630
Query: 65 ctagaagatgtatcctcttgagatccttcacctagcactgggatcttggttacagccttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ctagaagatgtatcctcttgagatccttcacctagcactgggatcttggttacagccttc 570
Query: 125 ccaaatcaacccagttttagtggaggagtcataaaggcacagaaggccatgggatttcac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ccaaatcaacccagttttagtggaggagtcataaaggcacagaaggccatgggatttcac 510
Query: 185 ggatgaaacgggcagctacacataaatcaagctgtacttgcttcatcttccagaaaggca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggatgaaacgggcagctacacataaatcaagctgtacttgcttcatcttccagaaaggca 450
Query: 245 tgggtgctctgttagaagcagcagccttgagttaccttagacaatgctgtatgaacagac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tgggtgctctgttagaagcagcagccttgagttaccttagacaatgctgtatgaacagac 390
Query: 305 acatcgtagtttcctcttgattgctacaagaaattgaataaacttgcatttcctaactcc 364
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 acatcatagtttcctcttgattgctacaagaaattgaataaacttgcatttcctaactcc 330
Query: 365 agggctgtaactcagatttcttattgaccggatggttaggggtaggaggatctcttgggg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agggctgtaactcagatttcttattgaccggatggttaggggtaggaggatctcttgggg 270
Query: 425 ctgaaaagatgttttgccctcttatttacatagacctgactctgtgggagcagtgagcac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctgaaaagatgttttgccctcttatttacatagacctgactctgtgggagcagtgagcac 210
Query: 485 cctt---catagtca 496
|||| ||||||||
Sbjct: 209 ccttctccatagtca 195
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_f03.g1 MSMg01no382_f03.g1 CHROMAT_FILE:
MSMg01no382_f03.g1 PHD_FILE: MSMg01no382_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:02 2005
(525 letters)
>mm_chr3_120785096_120786020
Length = 925
Score = 946 bits (489), Expect = 0.0
Identities = 516/525 (98%)
Strand = Plus / Plus
Query: 1 caggcctcaggaagctcaggtcctaagtgcaggtgccaggccccagctcactagttgtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggcctcaggaagctcaggtcctaagtgcaggtgccaggccccagctcactagttgtcc 260
Query: 61 agaaagcctgaatagaaaagcctaagaattagcgttttaataatgactcttctatgtctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaagcctgaatagaaaagcctaagaattagcgttttaataatgactcttctatgtctt 320
Query: 121 gtagcagaggctctcagccttcctaaggctgcagtcctttaatacagtccctcatgttgt 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagcagaggctctcagccttcctaaggctgcagtcctttaatacagtccctcatgttgt 380
Query: 181 ggtggccccccatcataaaaccatttccactgctatctcatgtcattttgctactgttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtggccccccatcataaaaccatttccactgctatctcatgtcattttgctactgttat 440
Query: 241 ggattgcaatataaatagaggtcacaggatggtctcagacgaccccttgtgaaagggtca 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 ggattgcaatataaatagaggtcacaggatggtctcaggcgaccccttgtgaaagggtca 500
Query: 301 ttcaacccccaaaggggtcacaatccacagggtaagaaccactgtcctatagaatcagga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 501 ttcaacccccaaaggggtcacaatccacagggtaagaaccactgtcctatagaataagaa 560
Query: 361 acaggatagagtcttgtcttccagggaaaggacaccagcaagctggggctgatgggtgac 420
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaggatagagacctgtcttccagggaaaggacaccagcaagctggggctgatgggtgac 620
Query: 421 atcataggagagtgattagcatttataaagtcctgggctccggtcccagaactgaaaaac 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcataagagagtgattagcatttataaagtcctgggctccggtcccagaactgaaaaac 680
Query: 481 caggcatggtagcaaatgcttaaaatccactcagggggaaggagg 525
||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 681 caggcatggtaacaaatgcttaaaatccactcaggtggaaggagg 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
