Query= MSMg01no382_g11.b1 MSMg01no382_g11.b1 CHROMAT_FILE:
MSMg01no382_g11.b1 PHD_FILE: MSMg01no382_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:08 2005
(505 letters)
>mm_chr3_141065229_141066140
Length = 912
Score = 832 bits (430), Expect = 0.0
Identities = 487/512 (95%), Gaps = 15/512 (2%)
Strand = Plus / Plus
Query: 4 ggaattctaacctctccctt---tttttttatctgtatcataagccctcccagtaagagt 60
|||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattctaacctc-----taaatttttttatctgtatcataagccctcccagtaagagt 260
Query: 61 cagagaatcatagcagaaggatgagcagagagat----aaaaaaaaaaaaaaccaaagac 116
|||||||||||||||| ||||||| ||||||||| |||||||||||||| |||||||
Sbjct: 261 cagagaatcatagcagcaggatgaacagagagataaaaaaaaaaaaaaaaaaacaaagac 320
Query: 117 attgaatggctaaacgatgaggaatacaggcaagtcacacatattaactgataatagttg 176
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 321 attgaatggctaaacgatgaggaatacaggcaagtcacacatactaaatgataatagttg 380
Query: 177 ggagcatgtagaaactctgctcagtctcaggcc-tccccccc-ccc-aaaaaataatcca 233
|||||||| |||||||||||||||||||||||| |||||||| ||| |||||||||||||
Sbjct: 381 ggagcatgcagaaactctgctcagtctcaggccttccccccctcccaaaaaaataatcca 440
Query: 234 acatgaaggagggaggggaacacagagttcgaccctagtgaagcacctgctgcaatgaac 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatgaaggagggaggggaacacagagttcgaccctagtgaagcacctgctgcaatgaac 500
Query: 294 agctgctgaaagaggagagttaacttttctccctaggatgtagaccacgctccacagaac 353
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 agctgctgaaagaggagagttaacttttctccctaggatgtagaccatgctccacagaac 560
Query: 354 acctcctatgactatatgagcaggacaacctctacttgatggattggtcttacaaaattt 413
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atctcctatgactatatgagcaggacaacctctacttgatggattggtcttacaaaattt 620
Query: 414 aaaaaggacaagaagtaggatagtctgagacggatctgggaggagtcaaaggagtgtgtg 473
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 aaaaaggacaagaagtaagatagtctgagatggatctgggaggagtcaaaggagtgtgtg 680
Query: 474 tgtgatatcaatgtattgtattttatgaaatt 505
||||||||||||||||||||||||||||||||
Sbjct: 681 tgtgatatcaatgtattgtattttatgaaatt 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 912
Length adjustment: 10
Effective length of query: 495
Effective length of database: 902
Effective search space: 446490
Effective search space used: 446490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_g11.g1 MSMg01no382_g11.g1 CHROMAT_FILE:
MSMg01no382_g11.g1 PHD_FILE: MSMg01no382_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:08 2005
(548 letters)
>mm_chr3_141245372_141246316
Length = 945
Score = 992 bits (513), Expect = 0.0
Identities = 539/549 (98%), Gaps = 5/549 (0%)
Strand = Plus / Minus
Query: 1 taccgacaaagacagcctaaaagtcactcatgagacattaaaaatatagttactagaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 taccgacaaagacagcctaaaagtcactcatgagacattaaaaatatagttactagaaat 686
Query: 61 tatttctgttaactttatctgctcatagatttgcataagtattaaggataatatgcaaag 120
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtt--tgttaactttatctgctcatagatttgcataagtattaaggataatatgcaaag 628
Query: 121 ttttgaaaagttcaggaataacaaaaagaaaaatatgttacttcaattgcttaaaatttt 180
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 627 ttttgaaaagttcaggaataacaaaaagaaaaacatgttacttcaactgcttaaaatttt 568
Query: 181 cttagcagttattttaatacatatattcagctttaaaaattacatattaacctagagatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cttagcagttattttaatacatatattcagctttaaaaattacatattaacctagagatt 508
Query: 241 ctttattcaatatatattatgaacattaaatcatatcacctttattgttgaatgaggttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ctttattcaatatatattatgaacattaaatcatatcacctttattgttgaatgaggttt 448
Query: 301 tgctacttttatgcttcttcaaattttaaatgtgttatgctttaagagttttaagtaatt 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 447 tgctacttttatgcttcttcaatttttaaatgtgttatgctttaagagttttaagtaatt 388
Query: 361 cagata-tctgtctcatggatattaatatttactttatagaaacttcttcacttaattca 419
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 387 cagatattctgtctcatggatattaatatttactt--tagaaacttcttcacttaattca 330
Query: 420 tatatttttagctctagaatatactaaatatttatttttgctaatttttaatggtttcct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tatatttttagctctagaatatactaaatatttatttttgctaatttttaatggtttcct 270
Query: 480 cattatttctcatctctatttctgtaacacatttgctatttattctgatgcatagtttgg 539
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 269 cattatttctcatctctatttctgtaacacatttgctatttattctgacgcatagtttgg 210
Query: 540 aaaccatac 548
|||||||||
Sbjct: 209 aaaccatac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 945
Length adjustment: 10
Effective length of query: 538
Effective length of database: 935
Effective search space: 503030
Effective search space used: 503030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
