BAC Information

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BAC

Clone NameMSMg01-382I10
Chromosome3 (Build37)
Map Location 125,456,556 - 125,457,194
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668820, Ndst4
Downstream geneUgt8a, Arsj, Camk2d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382I10.T7 (MSMg01no382_i10.b1)MSMg01-382I10.TJ (MSMg01no382_i10.g1)
ACCAG486409AG486410
length7531,727
length of high quality
(start - end)		646 (29 - 674)---
definitionCHROMAT_FILE: MSMg01no382_i10.b1 PHD_FILE: MSMg01no382_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:18 2005CHROMAT_FILE: MSMg01no382_i10.g1 PHD_FILE: MSMg01no382_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTATACGACTCACTATATTCAGAGGATCCGCGGAATTCTCTTTTGTTAT
CTTATATGAGCATGTAATACATTTCCAGGGACTGGGACATTTAAAAGGAT
GTGTTTGGTTTATGAATATTTGACAATGTGTAATAAACTTTTATATTTTA
GCAATTTTTTAAACAAGAGTCTTGAAGTTTTAGTCATTTTAGTATATTCC
TCTAAAATCTACACCTGGAACTCAGTAAACATAAGCACATTTTAATCTCC
TCTGTACATGTTTTATTTTTTATATGTTGTAAAGAATCATTAAAAATATA
ATGGCATCCCTGTAGTGGCTAAGCATCTGGAAGACAACTGAGTTGTTAAA
AATTGTACTATGTTTATACAGTCTAGACTTATTATAAATTTATCAATTAA
AATCCACTTACCATTGCTTAAGTGGATCAATTGTGAAATATAAATTTGAA
AAGTGCCCTCAGCTTGGGGAAATGCCATACTCAACGAGCTCTTGTTGGCC
ACTGAAGCAGACATGTTCCAAACACTGTTTATGATATTATGCTCACACTC
TTTGATATAACTTCAAGGAAACTTATTTGATATAAAGAAAAAAATTTAAA
AAGTGATTTGTTTCCAACACTCAGCAACTGCTAGGTTAACATGTANGCTT
TATTTGAGGTTTCACATTCCTGTGACTCTGTCTGGCATTAGTTAAACTTC
ATTTATGAGGTTACCTCATTTATGAAGTACTGGAATTAAACAGCATTGTT
GTA

TCGTTCTGTTCATATNTATATAATTGTCCTATATNTACTGGCGAATGAGA
GCCGCAAGANCNTCTCCTTTCCTCTCCTGTTATTGACGACGAGCGCGCGA
CGCGCCCCGGGNGATGTCCTCGGAACGGTGTTTGTCTTTTATTGATTACG
ATGGAGTAATCTTATATCAAGAGAGAAAGAATATCCACGCGTAGAACACT
ACCAACGTCACACGTAATCTCTCTGTTGTTTGCGGGACAACTCGTCTGTC
ATCGTGGCCGGAGAGGCAGACGACTGTACTAACCTCAGCCATGCTGTGAG
CTGCGCGACGATGTACAGGGAGGGCACGACTTAATGCTACCAGCTCATCT
TACATACTCATTACTAGGAACAGCCCTACTATCTCGAAGTTCGCGCTGCG
CTGCGCGCTCCGTAGTGGGCGTCCGACGGGTCGCGGTTTGTTTGCGCATA
GCGCGCTAACTCCATCTACCAGCCCTTGTAGCTGGCATTAACATGTGTGC
GTGGGTACGGAGCAGTGAATTGGTGTCTCAGACCTCGCATGACACGCATG
CCCGTAAACAACGCTATGATTCCGCCATACAGAAGTCATGGAGTGAGGAG
TAATAGAGTATATAATAAGAATAGTAGGAGCGTATCCGNGATAATAGCAG
GCCTATATTGAATATATGGAGAAAAATGAGAAGAGACGCGAATGATAATC
AGGAGCGTGTTATGTATAGGTAACGACGCGAAGAACATTCGGAACATGAT
TGGAGAGTGTCGCACGCCGAGATAGAGACGAGCGACAAATACGCTAGTCA
CGTAACCTATATAACTCTCTGTAATCTCTAACTTACTCTGCACACGTCTA
CGTCATATCACACGTTTATCTATGGCGATAACGACGCCTATCCGTTTACC
TTTAGATCGATGATATTGACTTACGAGCCACACGGCAGCACTGCCACATA
TCGCGTAAGACGATTCGGGCAAGACGCGTAGCAGAGCTGAACTGAGTATG
ATGATCGATATATAACACTNGAGACACAAATGTTATAAGTAATANGCGCG
CGCATAAACGCTCAACTGCGAGGCGGCTATAGTTGGATGGATAGAGCGCG
TGAGAGACGCCGATACTGAAGTCGTGTGAATGTGCTCACGGCAAGATCAG
AGACATGGAGAGATGGTTCTATGACAGTTGTGCAACGAGATCGTTGCGTA
GAATGCTAGNGACGGATATAGAACTCACGAGCAACTTCACATCATAGNGC
ACGAATACGATGCGCACTCGCGATACACGCAGAGCCAGGCAGTAGACGTG
CTGTCGACGCTATTGATGACTGATNTCCTAGCTGCCTCGCCTACATCATG
AATTATTTCGCAATAGGAGTCAGTGTGATCAGCGATGGCACACGGCTATG
CTGACGTCAANGAATATAGTTAATAGCCATGCGACACACCACCGCCACAC
CATAATATGCATCACGCCGAGCGCGTACGATGAGAGAGTATAATATACAG
TACAAGTAACTCATGTAATCAAATCCATTGCTCTAATGTAACTGAAACGA
TACACTGCTAATAAGAAGATACCGCTAGCTCGCGCTGAGTCGATGTAGTG
TTAGCGTGGCTGCAAGCGTCTATCTACAGAGGAGATAGTGANTCGCACGT
GATATCGTTTCTACAGAGTACATANTATGGTACGACTACGACAAGAGAGA
ACGCTAGCGATATATTATACTTACTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_i10.b1 MSMg01no382_i10.b1 CHROMAT_FILE:
MSMg01no382_i10.b1 PHD_FILE: MSMg01no382_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:18 2005
         (646 letters)



>mm_chr3_125456351_125457394
          Length = 1044

 Score = 1137 bits (588), Expect = 0.0
 Identities = 629/643 (97%), Gaps = 6/643 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctcttttgt-tatcttatatgagcatgtaatacatttccagggactgggacattt 64
           ||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 gaattctcttttgtaaat-ttatatgagcatgtaatacatttccagggactgggacattt 786

                                                                       
Query: 65  aaaaggatgtgtttggtttatgaatatttgacaatgtgtaataaacttttatattttagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 aaaaggatgtgtttggtttatgaatatttgacaatgtgtaataaacttttatattttagc 726

                                                                       
Query: 125 aattttttaaacaagagtcttgaagttttagtcattttagtatattcctctaaaatctac 184
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 725 aattttttaaacaagagtcttgaagtcttagtcattttagtatattcctctaaaatctac 666

                                                                       
Query: 185 acctggaactcagtaaacataagcacattttaatctcctctgtacatgttttattt-ttt 243
           |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||
Sbjct: 665 acctggaactcagtaaacataagcacattttaatctcctctgtacatg-tttctttcttt 607

                                                                       
Query: 244 atatgttgtaaagaatcattaaaaatataatggcatccctgtagtggctaagcatctgga 303
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 606 atatgttgtaaagaatcattaaaaatataatggcatccctg-agtggctaagcatctgga 548

                                                                       
Query: 304 agacaactgagttgttaaaaattgtactatgtttatacagtctagacttattataaattt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 agacaactgagttgttaaaaattgtactatgtttatacagtctagacttattataaattt 488

                                                                       
Query: 364 atcaattaaaatccacttaccattgcttaagtggatcaattgtgaaatataaatttgaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 atcaattaaaatccacttaccattgcttaagtggatcaattgtgaaatataaatttgaaa 428

                                                                       
Query: 424 agtgccctcagcttggggaaatgccatactcaacgagctcttgttggccactgaagcaga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agtgccctcagcttggggaaatgccatactcaacgagctcttgttggccactgaagcaga 368

                                                                       
Query: 484 catgttccaaacactgtttatgatattatgctcacactctttgatataacttcaaggaaa 543
           ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 367 catgttccaaacactctttatgatattatgctcacagtctttgatataacttcaaggaaa 308

                                                                       
Query: 544 cttatttgatataaagaaaaaaatttaaaaagtgatttgtttccaacactcagcaactgc 603
           ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 307 cttatttgatataaagaaaaaaatt-aaaaagtgatttgtttccaacacccagcaactgc 249

                                                      
Query: 604 taggttaacatgtangctttatttgaggtttcacattcctgtg 646
           |||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 248 taggttaacatgtaggctttatttgaggtttcacatttctgtg 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1044
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1034
Effective search space:   657624
Effective search space used:   657624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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