Query= MSMg01no383_d19.b1 MSMg01no383_d19.b1 CHROMAT_FILE:
MSMg01no383_d19.b1 PHD_FILE: MSMg01no383_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:15 2005
(420 letters)
>mm_chr3_89129678_89130497
Length = 820
Score = 766 bits (396), Expect = 0.0
Identities = 414/420 (98%)
Strand = Plus / Plus
Query: 1 attcttgaaggactcggtctttctgtgagtgggatgagttgctctttgtgcctagggcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcttgaaggactcggtctttctgtgagtgggatgagttgctctttgtgcctagggcct 260
Query: 61 gatgtgtggcaggaggagtcctctgtcagtggggagtggacctttatctctatctgtgac 120
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 gatgtgtggcaggaggagtcctctgtcagtggggagtacacctttatctctatctgtgac 320
Query: 121 tccagtcactcttgactgacctgcggtaggaatagattatctgtctggtgctgccagcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccagtcactcttgactgacctgcggtaggaatagattatctgtctggtgctgccagcca 380
Query: 181 gtacgtatgtacacacatatctacagtactgtgacatgggacacaggcagtttcacaaag 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 gtacgtatgtacacacatatctacagtactgtgacatgggacataggcagtttcacaaag 440
Query: 241 caatactgaccactgctgtaagggacgtgtccttatggccgtcttttgtttcattcttta 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 caatactgaccactgctgtaagggacgtgtccttatgaccgtcttttgtttcattcttta 500
Query: 301 aaagtgtagttagggactgaagagatggctcagtaggtaagaacactttttactcttgca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagtgtagttagggactgaagagatggctcagtaggtaagaacactttttactcttgca 560
Query: 361 aaggacctgggttcaattcccagcacccatacggcagtttacaatcacctgtatttccag 420
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 aaggacctgggttcgattcccagcacccatatggcagtttacaatcacctgtatttccag 620
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space: 333321
Effective search space used: 333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no383_d19.g1 MSMg01no383_d19.g1 CHROMAT_FILE:
MSMg01no383_d19.g1 PHD_FILE: MSMg01no383_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:15 2005
(462 letters)
>mm_chr3_89268643_89269504
Length = 862
Score = 824 bits (426), Expect = 0.0
Identities = 455/476 (95%), Gaps = 19/476 (3%)
Strand = Plus / Minus
Query: 1 caggatagccagagctatacagagaaaccctgtcttgaaaaaccnnnnnaaaaaaaaaaa 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 504 caggatagccagagctatacagagaaaccctgtcttgaaaaacc-----aaaaaaaaaaa 450
Query: 61 aaaaaa--------------aaagaaagaaagaaagaaaagacaatggtgtatatcaagg 106
|||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aaaaaaaaaaaaaaagaaagaaagaaagaaagaaagaaaagacaatggtgtatatcaagg 390
Query: 107 aaggcttcccaatggaggtgacatgaaaagtgtcagagtaaatcaggtaaaaaggtcagg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aaggcttcccaatggaggtgacatgaaaagtgtcagagtaaatcaggtaaaaaggtcagg 330
Query: 167 aaggggcagctgggcaggaaaaagacacgcaaaggcatgatctactaggtgtggtggtac 226
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 329 aaggggcagctgggcaggaaaaagacacgcaaaggcatgatctgctaggtgtggtggtac 270
Query: 227 acacagttaattcaggcacttgggaggcagaggcaggtggatctctgtgagtgtctgggg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 acacagttaattcaggcacttgggaggcagaggcaggtggatctctgtgagtgtctgggg 210
Query: 287 ccatcctagtctacaaagtagctggccctgacaacatagtaaaacattgtctaaataaat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ccatcctagtctacaaagtagctggccctgacaacatagtaaaacattgtctaaataaat 150
Query: 347 aaataataaaacagagagaaaagaaaacagaagggaaggcaagaaggaaaaaaagcaaag 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 aaataataaaacagagagaaaagaaaacagaagggaaggcaagaaggaaaaaaagcaaag 90
Query: 407 tcacaagtacataactgatgtaagagacgctggtggctacagctctgttaggatgg 462
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 89 tcacaagtacataactgatgtaagagacgctggcggctacagctctgttaggatgg 34
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
