Query= MSMg01no383_j18.b1 MSMg01no383_j18.b1 CHROMAT_FILE:
MSMg01no383_j18.b1 PHD_FILE: MSMg01no383_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:41 2005
(506 letters)
>mm_chr3_14140983_14141888
Length = 906
Score = 948 bits (490), Expect = 0.0
Identities = 499/502 (99%)
Strand = Plus / Plus
Query: 5 gaattcaaaaagaatatgaaattacaattcataggaatagtaacaagcaaaaatatgcac 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaaagaaaatgaaattacaattcataggaatagtaacaagcaaaaatatgcac 264
Query: 65 cctatgccttatatcccaataacttatatcatcacttgtacttgtatggcatataaaata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctatgccttatatcccaataacttatatcatcacttgtacttgtatggcatataaaata 324
Query: 125 acaaaagaccatatcaatcaattacctgaaaataaatctcagtttgcaatgaacatctct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaaaagaccatatcaatcaattacctgaaaataaatctcagtttgcaatgaacatctct 384
Query: 185 ttattgctcctatgggtctgtcaaacagtatgagaggaatgtggtcatatttcctacaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttattgctcctatgggtctgtcaaacagtatgagaggaatgtggtcatatttcctacaga 444
Query: 245 gttcaaacactgagacattggtaagagaacagaagatccaatttaatgtgagtaagaatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttcaaacactgagacattggtaagagaacagaagatccaatttaatgtgagtaagaatt 504
Query: 305 acctcgatttagaaaaagaaaacaagatacgtttggttagcaatatagtaactactttat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 505 acctcgatttagaaaaagaaaacaagatacgtttggttagcaatatagtaactgctttat 564
Query: 365 aaacctcagaggatgttccatggttaaatcccataacctacagagaaaaagaaaaagtct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaacctcagaggatgttccatggttaaatcccataacctacagagaaaaagaaaaagtct 624
Query: 425 acactcccacagctttatcagctatactcccacagcttcatcagcacgccatacacacat 484
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 625 acactcccacagctttatcagctacactcccacagcttcatcagcacgccatacacacat 684
Query: 485 gtggagataaagccccccttgg 506
||||||||||||||||||||||
Sbjct: 685 gtggagataaagccccccttgg 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no383_j18.g1 MSMg01no383_j18.g1 CHROMAT_FILE:
MSMg01no383_j18.g1 PHD_FILE: MSMg01no383_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:42 2005
(454 letters)
>mm_chr3_14302734_14303587
Length = 854
Score = 774 bits (400), Expect = 0.0
Identities = 438/454 (96%), Gaps = 8/454 (1%)
Strand = Plus / Minus
Query: 1 attgtgtagctgattcatatcatcttgatgaaaggctagatgctaataatggacacaaga 60
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 493 attgtgtagctgattcatatcatcttgaggaaaggctagatgctagtaatggacacaaga 434
Query: 61 acatctagtaattatgatgctttatgtgcatagaataaagtttagcaaatggtagcttta 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 acatctagtaattatgatgctttatgtgcatagaataaagtttagcaaatggtagctttg 374
Query: 121 attcatgaataaagttgtatttaaatataatcatactcttgaattgttttagggcttgtt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 373 attcatgaataaagttgtatttaaatataatcatactcttgaattgttttagggtttgtt 314
Query: 181 tgtaatccagtggttgccatataattatgccactaaaaatgtcactatttctctttaaaa 240
|| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 313 tgcaatccagtggctgccatatgattatgccactaaaaatgtcactatttctctttaaaa 254
Query: 241 tttattttctctattactataactagaatggcaattagggagataaaacatatctccaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tttattttctctattactataactagaatggcaattagggagataaaacatatctccaac 194
Query: 301 atctggttttcttttttcttttttttttcctccacaggagcaattccgggttaaaatttt 360
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 193 atctggttttcttttttctttttttttt--tccacaggagcaattctgggttaaaatttt 136
Query: 361 ggagatgggtgggtgccccccttcctcagccaggtgtggggcatgcctaacctatggata 420
||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ggagatgggtggg-gccccccttcctcagccaggtgtggggcatgcctaacctat----- 82
Query: 421 tgccatctacttcttttgtgtatttgttgttgtt 454
||||||||||||||||||||||||||||||||||
Sbjct: 81 tgccatctacttcttttgtgtatttgttgttgtt 48
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
