BAC Information

Click to search

BAC

Clone NameMSMg01-383O12
Chromosome3 (Build37)
Map Location 37,612,976 - 37,784,389
singlet/doubletdoublet
Overlap geneEG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik
Upstream gene4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1
Downstream geneLOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383O12.T7 (MSMg01no383_o12.b1)MSMg01-383O12.TJ (MSMg01no383_o12.g1)
ACCAG487467AG487468
length747761
length of high quality
(start - end)		473 (40 - 512)518 (71 - 588)
definitionCHROMAT_FILE: MSMg01no383_o12.b1 PHD_FILE: MSMg01no383_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:04 2005CHROMAT_FILE: MSMg01no383_o12.g1 PHD_FILE: MSMg01no383_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,783,922 - 37,784,389)(37,612,976 - 37,613,493)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTC
TTTTCATGTTCGACATATGACTTTAATCACCCACTAGCCCATCCACATGG
AAATGTGTGCTAACTGAATGAAAGCAAAAGTCATAAATTTAGGAGAAAAC
CAAGTATTTTAAGCCAGTATTTTTTTCTTTTAATGAGTTTAGCTTTAGAC
TTTGCTTAAGTGGACCAGTTAATATCCAAAGCAAAACACTCTGCTAAAAT
AAACAGAAGAATTTGTGAAAACTAGTTTCCAGAAATTACCTAAGTGATTT
TTATATGATCTGATTTCTTTCTCATTTCTTTAAGCCCTAAAGGTTTTTTG
TGTGCATGTGTGAGCGTATTTGAAACTCCCCAATGAGAGAGTCTGTATTG
ATGTAACAGAGCACCCTGAATTGATGTTACAAGGATGACTTTCTCAGAGC
CTCAGTGGCTCATCTTCCCTTTAAACGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGNNTTNNTTTTTTNTTTTTTTTTTTTTTNNTTTTTTTT
TTTTTTTGTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTT
TTTTTNTTTTTTTTTTTTTTTTNTTTNTTTTTTTTTNNTTTTTTTTTTTT
TTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTT
TTTTTTTTTTTNTTTTNGTTTTTTTNNTTTTTTTGGTGTTTTGTGTG

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTATCTGTGTTTTCTTATTTCATCTTTTGAG
GTGAAAATGTATTAATTAGCATGGAATTTAAGAATTCAACAGGTGGATTT
TCCTCCAGAAATTATTAACATGTAAAATTATAACATGGGATTCAAAATTA
TATTAAGGTAGTATAATTTCCTTTGTTATGTTTATTTCTTTCCAGAATTA
AAAAGTACACACACACACACATATATTGCACATTTAGCCTTAGAACTAAT
GCATAGTCACAGTGGCGATGGGATAAGAGGGCTGGGTGTGTTGGCACAAA
TCTTTAATCTCAGTACTCTTGAGGCAGGTAGGCAGATGTCTGTGAGTTTA
AGGTCAAGCTAGTCTACAGAGTTAAGTTCCGGGTCAGTTAGACCCTATCT
CAAACAAACAAACAAACAAACAAACAACATATTTACAACAGTTGCAATGA
AAGAATGAGTTTTGTACTTAGCTGAATGAAACATAATTAGGAAGATAGTT
CCTAAAGCAATTAGGAAGCTAATTAAATATAGGTGAAACAACGTGGCATT
TAGGGGCTTGCTTTAAATCCCTCAATGGTGAAGAGAGGGAGAAAAAGGCC
TCAGGCAGGGTGGCTGTATTGGATGAATTGCATACGGGCAGATGGCTGGT
GGAACACCCACTAAAAAATGGGGGGAATGGTTTTCTCTTGGGCCCGTTGA
TCCGTGAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_o12.b1 MSMg01no383_o12.b1 CHROMAT_FILE:
MSMg01no383_o12.b1 PHD_FILE: MSMg01no383_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:04 2005
         (473 letters)



>mm_chr3_37783753_37784625
          Length = 873

 Score =  897 bits (464), Expect = 0.0
 Identities = 467/468 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcttttcatgttcgacatatgactttaatcacccactagcccatccacatggaaat 65
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gaattcttttcatgttggacatatgactttaatcacccactagcccatccacatggaaat 578

                                                                       
Query: 66  gtgtgctaactgaatgaaagcaaaagtcataaatttaggagaaaaccaagtattttaagc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gtgtgctaactgaatgaaagcaaaagtcataaatttaggagaaaaccaagtattttaagc 518

                                                                       
Query: 126 cagtatttttttcttttaatgagtttagctttagactttgcttaagtggaccagttaata 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cagtatttttttcttttaatgagtttagctttagactttgcttaagtggaccagttaata 458

                                                                       
Query: 186 tccaaagcaaaacactctgctaaaataaacagaagaatttgtgaaaactagtttccagaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tccaaagcaaaacactctgctaaaataaacagaagaatttgtgaaaactagtttccagaa 398

                                                                       
Query: 246 attacctaagtgatttttatatgatctgatttctttctcatttctttaagccctaaaggt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 attacctaagtgatttttatatgatctgatttctttctcatttctttaagccctaaaggt 338

                                                                       
Query: 306 tttttgtgtgcatgtgtgagcgtatttgaaactccccaatgagagagtctgtattgatgt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tttttgtgtgcatgtgtgagcgtatttgaaactccccaatgagagagtctgtattgatgt 278

                                                                       
Query: 366 aacagagcaccctgaattgatgttacaaggatgactttctcagagcctcagtggctcatc 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aacagagcaccctgaattgatgttacaaggatgactttctcagagcctcagtggctcatc 218

                                                           
Query: 426 ttccctttaaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 473
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ttccctttaaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 170


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no383_o12.g1 MSMg01no383_o12.g1 CHROMAT_FILE:
MSMg01no383_o12.g1 PHD_FILE: MSMg01no383_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:04 2005
         (518 letters)



>mm_chr3_37612776_37613693
          Length = 918

 Score = 1002 bits (518), Expect = 0.0
 Identities = 518/518 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatctgtgttttcttatttcatcttttgaggtgaaaatgtattaattagcatggaattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatctgtgttttcttatttcatcttttgaggtgaaaatgtattaattagcatggaattta 260

                                                                       
Query: 61  agaattcaacaggtggattttcctccagaaattattaacatgtaaaattataacatggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaattcaacaggtggattttcctccagaaattattaacatgtaaaattataacatggga 320

                                                                       
Query: 121 ttcaaaattatattaaggtagtataatttcctttgttatgtttatttctttccagaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaaaattatattaaggtagtataatttcctttgttatgtttatttctttccagaatta 380

                                                                       
Query: 181 aaaagtacacacacacacacatatattgcacatttagccttagaactaatgcatagtcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaagtacacacacacacacatatattgcacatttagccttagaactaatgcatagtcac 440

                                                                       
Query: 241 agtggcgatgggataagagggctgggtgtgttggcacaaatctttaatctcagtactctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtggcgatgggataagagggctgggtgtgttggcacaaatctttaatctcagtactctt 500

                                                                       
Query: 301 gaggcaggtaggcagatgtctgtgagtttaaggtcaagctagtctacagagttaagttcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaggcaggtaggcagatgtctgtgagtttaaggtcaagctagtctacagagttaagttcc 560

                                                                       
Query: 361 gggtcagttagaccctatctcaaacaaacaaacaaacaaacaaacaacatatttacaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggtcagttagaccctatctcaaacaaacaaacaaacaaacaaacaacatatttacaaca 620

                                                                       
Query: 421 gttgcaatgaaagaatgagttttgtacttagctgaatgaaacataattaggaagatagtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttgcaatgaaagaatgagttttgtacttagctgaatgaaacataattaggaagatagtt 680

                                                 
Query: 481 cctaaagcaattaggaagctaattaaatataggtgaaa 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctaaagcaattaggaagctaattaaatataggtgaaa 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |