Query= MSMg01no384_b16.b1 MSMg01no384_b16.b1 CHROMAT_FILE:
MSMg01no384_b16.b1 PHD_FILE: MSMg01no384_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:19 2005
(483 letters)
>mm_chr3_127538286_127539164
Length = 879
Score = 752 bits (389), Expect = 0.0
Identities = 429/445 (96%), Gaps = 6/445 (1%)
Strand = Plus / Minus
Query: 5 gaattctgcggtagacaatgtttttgtatttgactttggagtacattacctgggttctgt 64
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 644 gaattctgcggtagacaatgtttttgtatttgactttggagtacattacccgggttctgt 585
Query: 65 aagaaccttgggttttgtttttttttttttaacagtgattttacaaatgatatcttcatt 124
||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aagaaccttgg-----gtatttttttttttaacagtgattttacaaatgatatcttcatt 530
Query: 125 acacactattcattaaaatttcgggttctcctggctcagcccaggcttggcagcatagga 184
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 529 acacactattcattaaaattgcgggttctcctggctcagcccaggcttggcagcatagga 470
Query: 185 gaggctagcagggtgagttcacgtgaggcatgtgatccttgtagatatgttgtagtgctt 244
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gaggctagcagggtgagatcacgtgaggcatgtgatccttgtagatatgttgtagtgctt 410
Query: 245 gatcgtgagtctgtactttgtctttggctgacaccttgagtgagtcctaggggttgtgga 304
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 409 gatcgagagtctgtactttgtctttggctgactccttgagtgagtcctaggggttgtgga 350
Query: 305 tgctgatgtcgaagaccatgtgatctgtgtcagtcctgtttc-tggcatctgtaagcata 363
|||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 349 tgctgatgccgaagaccatgtgatctgtgtcagtcctgtttcttggcatctataagcata 290
Query: 364 ggcttcaacagttcccttacttgaatcttcccataaacttaacgtttgctatcagtctta 423
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 289 ggcttcaacagttcccttacttgaatcttcccataaacttaccgtttggtatcagtctta 230
Query: 424 acagttctagcagcttcctggaagc 448
|||||||||||||||||||||||||
Sbjct: 229 acagttctagcagcttcctggaagc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 879
Length adjustment: 10
Effective length of query: 473
Effective length of database: 869
Effective search space: 411037
Effective search space used: 411037
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_b16.g1 MSMg01no384_b16.g1 CHROMAT_FILE:
MSMg01no384_b16.g1 PHD_FILE: MSMg01no384_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:19 2005
(413 letters)
>mm_chr3_127338643_127339455
Length = 813
Score = 791 bits (409), Expect = 0.0
Identities = 412/413 (99%)
Strand = Plus / Plus
Query: 1 caggccagccagggttacacagtgagaccttgtatctaaataaataaattaacaacatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggccagccagggttacacagtgagaccttgtatctaaataaataaattaacaacatac 260
Query: 61 tgagctggggacaagttcagtggcagaactctggatgtttaaatcaataaatacatgctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagctggggacaagttcagtggcagaactctggatgtttaaatcaataaatacatgctg 320
Query: 121 cctgggcaacgaagagcaaaagtggggatcttaaataataattatgtcacaacaggctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 cctgggcaacgaagagcaaaagtggggatcttaaataataattatgtcacaacagactcc 380
Query: 181 agtgttcagaaaaagctttattttaatagcaggaggttgagtaggctgtagtgatgcacg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgttcagaaaaagctttattttaatagcaggaggttgagtaggctgtagtgatgcacg 440
Query: 241 cctttaatccagcacttgggaggcagaggcaggtgaatctctatgctagcctgtactaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctttaatccagcacttgggaggcagaggcaggtgaatctctatgctagcctgtactaca 500
Query: 301 cagtgaattcctggacacaaccagggttatgtagagagacagatgttgcatatctgttaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagtgaattcctggacacaaccagggttatgtagagagacagatgttgcatatctgttaa 560
Query: 361 ttgagagagggagagagagagagagagagagagagagagagagagagagagag 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgagagagggagagagagagagagagagagagagagagagagagagagagag 613
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space: 324816
Effective search space used: 324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
