Query= MSMg01no384_k08.b1 MSMg01no384_k08.b1 CHROMAT_FILE:
MSMg01no384_k08.b1 PHD_FILE: MSMg01no384_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:59 2005
(498 letters)
>mm_chr3_32730800_32731697
Length = 898
Score = 917 bits (474), Expect = 0.0
Identities = 489/494 (98%)
Strand = Plus / Plus
Query: 5 gaattctctgaactcctgctgattgacagtgtggagagtttttatttgaaatgactgctc 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgaacacctgctgattgacagtgtggagagtttttatttgaaatgactgctc 264
Query: 65 acttgtgtcttggagacttgtgcccttgacctttggatgggaaacttctgtcactgtttt 124
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 265 acttgtgtcttggagacttgtgcccttgacctttggatgggaatcttctgtcactgtttt 324
Query: 125 aaatggcagacaatggagaagaagtcactttgccccgatggtactcacaaatgcatgcag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 aaatggcagacaatggagaagaagtcactttgccccgatggtactcacaaatgcacgcag 384
Query: 185 ggtaatacagagtagagaactggctgtgtacatgccacacacatattgaaatacaataca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtaatacagagtagagaactggctgtgtacatgccacacacatattgaaatacaataca 444
Query: 245 tgggctttcgacactgcttgtgtagtatttgatcctgtgtgggagatgttgtcaggtaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgggctttcgacactgcttgtgtagtatttgatcctgtgtgggagatgttgtcaggtaaa 504
Query: 305 ttcaacgtagagttctgggcagtctgtccgtctgtcttgtgtgtgtgtaaggtcagctgg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttcaacgtagagttctgggcagtctgtccgtctgtcttgtgtgtgtgtaaggtcagctgg 564
Query: 365 aaagtaaattatttccatccacagttactgttgtttgtcccataacatgtaagtgtcgac 424
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 565 aaagtaaattatttccatccacagttcctgttgtttgtcccataacatgtaagtgtcgac 624
Query: 425 actggaaagggaaggtgggtacttatgcatgcagctgatttagtgaattttttggaagaa 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 625 actggaaagggaaggtgggtacttatgcatgcagctgatttagtgaattttttggatgaa 684
Query: 485 gaggacctttaacc 498
||||||||||||||
Sbjct: 685 gaggacctttaacc 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_k08.g1 MSMg01no384_k08.g1 CHROMAT_FILE:
MSMg01no384_k08.g1 PHD_FILE: MSMg01no384_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:59 2005
(586 letters)
>mm_chr3_32902912_32903898
Length = 987
Score = 975 bits (504), Expect = 0.0
Identities = 520/526 (98%), Gaps = 3/526 (0%)
Strand = Plus / Minus
Query: 63 cttgcttccctgtacaaacgaggactataagttcctataggttgcaatgcccacagtggg 122
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 987 cttgcttccctgtacaaacgaggactataggttcctataggttgcaatgcccacagtggg 928
Query: 123 ctgggccctccccattaacggagaaagtgtcctccagacaaacccacaggctaatctgat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 ctgggccctccccattaacggagaaagtgtcctccagacaaacccacaggctaatctgat 868
Query: 183 gtgaacatttcctctactgaaggttctttttgcccaagtgactctagtttgtgtccagtt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 gtgaacatttcctctactgaaggttctttttgcccaagtgactctagtttgtgtccagtt 808
Query: 243 aagaaaaagtagccagaacaccatggttttaaagttttgtatagggcagcctcctattta 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 aagaaaaagtagccagaacaccatggttttaaagttttgtatagggcagcctcctattta 748
Query: 303 tctctctctcttttgccctcatacaaatcccatattgtgacgatccagacccatagagat 362
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tctctctctcctttgccctcatacaaatcccatattgtgacgatccagacccatagagat 688
Query: 363 ctaccttttgaactgcctccaacaagaacagaacacttttttcaaaatataaaatttcct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ctaccttttgaactgcctccaacaagaacagaacacttttttcaaaatataaaatttcct 628
Query: 423 gtataagaaaaaaaagtgtcctgttcatttcctctttgcccacaattcaactggactcta 482
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gtataag-aaaaaaagtgtcccgttcatttcctctttgcccacaattcaactggactcta 569
Query: 483 aactacaaagaaaaaac--agctgtcaggtttttttagattctggaagtggcagttatgg 540
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aactacaaagaaaaaacagagctgtcaggtttttttagattctggaagtggcagttatgg 509
Query: 541 aggaggaaacttacagaagtttgtttctggttcctggctgggctgc 586
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aggaggaaacttacagaagtttgtttctggttcctggctgggctgc 463
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 987
Length adjustment: 10
Effective length of query: 576
Effective length of database: 977
Effective search space: 562752
Effective search space used: 562752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
