Query= MSMg01no384_m11.b1 MSMg01no384_m11.b1 CHROMAT_FILE:
MSMg01no384_m11.b1 PHD_FILE: MSMg01no384_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:09 2005
(257 letters)
>mm_chr3_62606961_62607624
Length = 664
Score = 445 bits (230), Expect = e-129
Identities = 255/264 (96%), Gaps = 7/264 (2%)
Strand = Plus / Plus
Query: 1 acaaacaatttgcgaggtgaagaatgaactcatatgacaattatgacaacaaagcttcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaaacaatttgcgaggtgaagaatgaactcatatgacaattatgacaacaaagcttcaa 260
Query: 61 ggtaggctatatctaaactctcttgtaaagtctacctctatagcaaagcacctgtggcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtaggctatatctaaactctcttgtaaagtctacctctatagcaaagcacctgtggcct 320
Query: 121 ttacaataagaatga-ttctactgtttgataaaca-gttgaggctaagaag-aaggattt 177
||||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||||||
Sbjct: 321 ttacaataagaatgagttctactgtttgataaacaagttggggctaagaaggaaggattt 380
Query: 178 g-aaaaagcataagg-tcgattctgatgatg--aaatgcaaagtacatgggatttctttc 233
| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 gtaaaaagcataagggtcgattctgatgatggaaaatgcaaagtacatgggatttctttc 440
Query: 234 ataatgattagctctatttactgg 257
||||||||||| ||||||||||||
Sbjct: 441 ataatgattagttctatttactgg 464
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 664
Length adjustment: 9
Effective length of query: 248
Effective length of database: 655
Effective search space: 162440
Effective search space used: 162440
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no384_m11.g1 MSMg01no384_m11.g1 CHROMAT_FILE:
MSMg01no384_m11.g1 PHD_FILE: MSMg01no384_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:09 2005
(500 letters)
>mm_chr3_62780475_62781374
Length = 900
Score = 951 bits (492), Expect = 0.0
Identities = 498/500 (99%)
Strand = Plus / Minus
Query: 1 ctttcaatagccctcacagcactgctcactgggcaatgtctttatctaaagtgaagaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ctttcaatagccctcacagcactgctcactgggcaatgtctttatctaaagtgaagaagc 641
Query: 61 tgaggtctctgtttactgtgtgccaaggctttatgggaatacatgacaggtggttaggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tgaggtctctgtttactgtgtgccaaggctttatgggaatacatgacaggtggttaggtg 581
Query: 121 ccaattgccaaaaactccacaatttcccattcacaattggtcttaagcagttgttccaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ccaattgccaaaaactccacaatttcccattcacaattggtcttaagcagttgttccaga 521
Query: 181 aagtgctacttaactggatatttccacacactcctggctggctacgtgatgttatttctt 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 520 aagtgctacttaactggatatttccacacactcctggctgtctacgtgatgttatttctt 461
Query: 241 catagcttttcttgcttagccatactgacattgctgtaagttatcatctgattcttcaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 catagcttttcttgcttagccatactgacattgctgtaagttatcatctgattcttcaca 401
Query: 301 tttacaatcattgcagcctgctgtgaaatctaaaatatgtagtgtctgtagtcttcagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tttacaatcattgcagcctgctgtgaaatctaaaatatgtagtgtctgtagtcttcagaa 341
Query: 361 agctaatgtcaaggattaaacttgcccattgctggggttctttctaaatgaggatattga 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 340 agctaatgtcaaggattaaacttgcccattgctggggttctttctaaatgaggagattga 281
Query: 421 atttgagttagaaaggaagacattttacattctatttgaatattctttcagtattgtagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 atttgagttagaaaggaagacattttacattctatttgaatattctttcagtattgtagt 221
Query: 481 ctaagtgaacttagtctctg 500
||||||||||||||||||||
Sbjct: 220 ctaagtgaacttagtctctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
