Query= MSMg01no386_c08.b1 MSMg01no386_c08.b1 CHROMAT_FILE:
MSMg01no386_c08.b1 PHD_FILE: MSMg01no386_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:54 2005
(484 letters)
>mm_chr3_68330445_68331328
Length = 884
Score = 810 bits (419), Expect = 0.0
Identities = 467/489 (95%), Gaps = 11/489 (2%)
Strand = Plus / Minus
Query: 5 ggaattctcatctgtctcacggaaaatcagt----------cacacacacacacacacac 54
|||||||||||||||| | ||||||||| | |||||||||||||||||||
Sbjct: 758 ggaattctcatctgtc-gagggaaaatcaatcacacacacacacacacacacacacacac 700
Query: 55 acacacacacacacacggcaaaggaaggacgcacagagacagaagcagttattctaagga 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 acacacacacacacacggcaaaggaaggacgcacagagacagaagcagttattctaagga 640
Query: 115 catgggtttacaccacaaaagagtaatcaaaatattacaggcatcccattgtctgagaaa 174
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 639 catgggtttacaccacaaaagagtaatcaaaatattacaggcatcccgttgtctgcgaaa 580
Query: 175 ctcacaattacacagcactctagtctctggcatttaattttttgtttccatcatcctcac 234
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 579 ctcacaattacacagcactctagtctctggtatttaattttttgtttccatcatcatcac 520
Query: 235 tattattagcaagtagaaaacaatcgatacgatcaactgaggcagactaacagctacgct 294
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 519 tattattagcaagtagaaaacaatcgataagatcaactgaggcagactaacagctacgct 460
Query: 295 ccttctctgaccctccgctcactagtaccaacggtacgagaggcaaaacctgtaggcaga 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ccttctctgaccctccgctcactagtaccaacggtacgagaggcaaaacctgtaggcaga 400
Query: 355 tgagtgaacaccattcatgataaggcctggcacaggaagaaatgaaccaaagcccggggc 414
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 399 tgagtgaacaccattcatgataaggcctggcacaggaagaaatgagccaaagcccggggc 340
Query: 415 ttctgctctcagatgctgacactgtcagcaggatgttccccaggcactgctgtcactggg 474
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 339 ttctgctctcagatgctgacactgtcagcaggatgttccccaggctctgctgtcaccggg 280
Query: 475 ttccctgca 483
|||||||||
Sbjct: 279 ttccctgca 271
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_c08.g1 MSMg01no386_c08.g1 CHROMAT_FILE:
MSMg01no386_c08.g1 PHD_FILE: MSMg01no386_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:54 2005
(529 letters)
>mm_chr3_68181312_68182239
Length = 928
Score = 1000 bits (517), Expect = 0.0
Identities = 526/529 (99%), Gaps = 1/529 (0%)
Strand = Plus / Plus
Query: 1 ttttgctcattctgaggctgtgacagaattaaattattgatagccccctactggcatgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttgctcattctgaggctgtgacagaattaaattattgatagccccctactggcatgaa 260
Query: 61 tcaaatacagggtgtttggttacaacagctgaaaggtttcttgaatgtgggagcagctga 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 tcaaatacagggtgtttggttacaacagctgaaaggtttcttgaatgcgggagcagctga 320
Query: 121 tgatttgacagaaattcaattactatgactagtctacattagactttggagtcaatttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatttgacagaaattcaattactatgactagtctacattagactttggagtcaatttaa 380
Query: 181 ttattcttcacaagatttttaaatttcactcttctttaatagcgtgtttcaggagctaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttattcttcacaagatttttaaatttcactcttctttaatagcgtgtttcaggagctaga 440
Query: 241 gtactgctggacaggacactgaaacggtagaaatagaggagacagatgcgaccatggttc 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 gtactgctggacaggacactgaaacggtagaaatagaggagacagatgcaaccatggttc 500
Query: 301 tcttggagctcaagacttggagaatagacaatgatacaggtgcctgcagcaaagcctaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttggagctcaagacttggagaatagacaatgatacaggtgcctgcagcaaagcctaag 560
Query: 361 gattctgtaggaagagcgcatacatacgccccaagaaacagcagctgctcgaaggtaacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gattctgtaggaagagcgcatacatacgccccaagaaacagcagctgctcgaaggtaacc 620
Query: 421 ataggaactgggaggtctgagcagcctgtctgctaggttcaccagaacattgagacctta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataggaactgggaggtctgagcagcctgtctgctaggttcaccagaacattgagacctta 680
Query: 481 tgcaggtaggaaaagcattccagacaggaggatggaaactcatttaagt 529
|||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 tgcaggtaggaaaagcattccagacaggaggatggaaactcatt-aagt 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 928
Length adjustment: 10
Effective length of query: 519
Effective length of database: 918
Effective search space: 476442
Effective search space used: 476442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
