Query= MSMg01no386_f16.b1 MSMg01no386_f16.b1 CHROMAT_FILE:
MSMg01no386_f16.b1 PHD_FILE: MSMg01no386_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:09 2005
(663 letters)
>mm_chr3_27805816_27806881
Length = 1066
Score = 1203 bits (622), Expect = 0.0
Identities = 650/663 (98%), Gaps = 9/663 (1%)
Strand = Plus / Minus
Query: 5 gaattctttcaaaatttccttctccattgttacaagaaatggataatttgcttgatgcat 64
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 gaattctttcaaaacttctttctccattgttacaagaaatggataatttgcttgatgcat 756
Query: 65 aaatatctcttcctggagtctagagagaacaggggtcaggattgtgacctctggccactc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 aaatatctcttcctggagtctagagagaacaggggtcaggattgtgacctctggccactc 696
Query: 125 ttgcctacctttgatatttgcatagtgaaagacaagtctaccacttcacagtatctgcat 184
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 695 ttgcctacctttgatatttgcatagtgaaagacaagtctatcacttcacagtatctgcat 636
Query: 185 cactcctctgtgtacatgtgtgcctgggctgaggggagcagggacaggaagaccttgacc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 cactcctctgtgtacatgtgtgcctgggctgaggggagcagggacaggaagaccttgacc 576
Query: 245 aagagggcatggagacaaagcacactcctagtcactttccgaacgtcctgagtgagtatc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aagagggcatggagacaaagcacactcctagtcactttccgaacgtcctgagtgagtatc 516
Query: 305 acaaagtaccacagcactcagtactgttttatcatcaagagatagaaatgaatagaatgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 acaaagtaccacagcactcagtactgttttatcatcaagagatagaaatgaatagaatgt 456
Query: 365 tcagggaaaaaaagg-gggggggggg---ctgtggctgtgtttgtggcagcaagagaact 420
|||||||||||| || |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 455 tcagggaaaaaa-ggaggggggggggactctgtggctgtgtttgtggcagcaagagaact 397
Query: 421 gggaagaacatttggtaaaagagtcagcttttagccaagtatttatttccatcagccctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gggaagaacatttggtaaaagagtcagcttttagccaagtatttatttccatcagccctt 337
Query: 481 aagccagcactataaacatgagaagaaaccctctctttaggacaggactggagggtttgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aagccagcactataaacatgagaagaaaccctctctttaggacaggactggagggtttgg 277
Query: 541 gctgtgatcctagcagctaactctccagtttccttccactgtcctcanagctctgtaata 600
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 276 gctgtgatcctagcagctaactctccagtttccttccactgtcctcaaagctctgtaata 217
Query: 601 gcatcaagatttctccctccctctctccctccctccctccctctgtccctgtgccccacc 660
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 216 gcatcaagatttctccctc----tctccctccctccctccctctgtccctgtgccccacc 161
Query: 661 cca 663
|||
Sbjct: 160 cca 158
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1066
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1056
Effective search space: 689568
Effective search space used: 689568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_f16.g1 MSMg01no386_f16.g1 CHROMAT_FILE:
MSMg01no386_f16.g1 PHD_FILE: MSMg01no386_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:09 2005
(677 letters)
>mm_chr3_27700815_27701891
Length = 1077
Score = 1253 bits (648), Expect = 0.0
Identities = 669/676 (98%)
Strand = Plus / Plus
Query: 1 agcagctggaggtgaactatggagactaccaacagtttgtgagtttcgtttagctcagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcagctggaggtgaactatggagactaccaacagtttgtgagtttcgtttagctcagac 260
Query: 61 ttgcagtagaattggccctatgagtaaactaggaacacacacacccgcatgtgtgcatac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgcagtagaattggccctatgagtaaactaggaacacacacacccgcatgtgtgcatac 320
Query: 121 ataaatgcacatgtacacatgcacacatgggctctggactctcagttcatacatcaactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataaatgcacatgtacacatgcacacatgggctctggactctcagttcatacatcaactc 380
Query: 181 aaatctgagtgtttgaagctttctgctatgggtttctgacatggatatataatggatata 240
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatctgagtgtctgaagttttctgctatgggtttctgacatggatatataatggatata 440
Query: 241 tattcattgtacacttgacagggctcacagtggttctcaacctgtgggtcgtgacccctt 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattcattgtacgcttgacagggctcacagtggttctcaacctgtgggtcgtgacccctt 500
Query: 301 tgggggtcgaatatcagatatttacaattcattacagaagcaaaattactgttatgaagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggggtcgaatatcagatatttacaattcattacagaagcaaaattactgttatgaagt 560
Query: 361 agaaacaaaataattttatggtttgagggtcaccacgacatgaggagctgaattaaaggg 420
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 561 agaaacaaaataattttatggtttgagggtcaccatgacatgaggagctgtattaaaggg 620
Query: 421 tcatagcattcagaaggctgagaactgctggtttacaatcatctagacccaactctgggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcatagcattcagaaggctgagaactgctggtttacaatcatctagacccaactctgggc 680
Query: 481 atgtctttgagggaggtttagtgaatttaactgaacatggaggagctaccctgcatgtgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgtctttgagggaggtttagtgaatttaactgaacatggaggagctaccctgcatgtgg 740
Query: 541 gtgatcttgtctcatgggctggggtctcagagtgaataggaagaggaaaggaagctggga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgatcttgtctcatgggctggggtctcagagtgaataggaagaggaaaggaagctggga 800
Query: 601 accagcattcatctctatctgccttctgactgaggaggcaaggtgaccagctgcccagct 660
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 accaacattcatctctgtctgccttctgactgaggaggcaaggtgaccagctgcccagct 860
Query: 661 cctgctgccaggtgcc 676
||||||||||||||||
Sbjct: 861 cctgctgccaggtgcc 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
