BAC Information

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BAC

Clone NameMSMg01-386G23
Chromosome3 (Build37)
Map Location 59,022,368 - 59,022,613
singlet/doubletsinglet
Overlap geneP2ry12
Upstream geneTsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13
Downstream geneIgsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386G23.T7 (MSMg01no386_g23.b1)MSMg01-386G23.TJ (MSMg01no386_g23.g1)
ACCAG489403AG489404
length757879
length of high quality
(start - end)
246 (72 - 317)34 (70 - 103)
definitionCHROMAT_FILE: MSMg01no386_g23.b1 PHD_FILE: MSMg01no386_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:14 2005CHROMAT_FILE: MSMg01no386_g23.g1 PHD_FILE: MSMg01no386_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATAATTGCGGCGCTATACGACTCACATTTTTCGTACCGCGCGGAATTC
TCAATGATTACCAACAAAGAAACCAGGAATATGGGCAGAGAAGGAAAGGC
AGCTGTAAACAGACACAAAAGGCTACTCGGCCATGTAAAAGAAGATGCAG
GGGAAATAGGCAAAGCATCACTAGAGTGCCTGTCATTAGGCTTTTCGAAA
TTAACCCAGGGGTGCTGACACCAAGACCACAGTGTTGTAAAATACAGCCT
TCTACCAAAACAAGCACAAAGCTCTCATGACATCTCACAACACACCACCT
CGTTTTAAGTTGCTAGAGATGTATTTCTTGTGTAGATGAGATATTCAGGG
ATTCGGTTGTCTATTCACCCCTACTAATGCCCGCAGAAAAAATTAAATTA
ACCTCCGGTTTTAAACCACCGCTGTAATTCTAAAAAGGAGGCATGAAGAA
TAACAACCCAACCCCAGGACCCGGGAGCCCCCCCCCCCTCCTTTTCTCCT
CTTTTTTTATAAAAAAGACATATATGGGATTGTTGCTCGGGGGTGTCAAA
CCTCTACCCTCTCGCACAAAAATATCCCCCCTTTCTCCCCCCTGGGGTAC
CATACTCCCCCCGGTGTGTGTTTTAAAAAACTCTCCTCCACACCCCCCCC
TCTTTTTTGACTTCTATTATACCTCCGTCTGGGTCCCCGTTTTGTGTGGC
AGGTAATATGTTGTCTCCCTACCCCTTTACCCTTCTCCCTCCTTCTCCTC
GGTGACG
CATGTGTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTGCGGCATTCCCAGGACACTCCCCCTCCCCCTCCTCCTCCCCCT
CACCCNTCCTTTTTCCCCCCCTCNTNTTTTTCCCCCTCACACCCAACTCT
AACTTCTCCATCTTCCCTTTCTTTCCTCACCCCCCCCCCTCCCCCTCTTT
TCCCCCCCTTTCACCCACCCCCTTCTTTCCCCCCCCCCCACTATCCCTCC
TCTTCATACCTTCCTCCCCCTTTTTCCCCCCCCTCCCTATTTCTTTCTTC
CACCCCCCCACCCCCCCTCTTTATTTTTTCTNTCTCCCCTTCCCTTCTAC
TCCAATTCCCCCTCCTTCTTTTTTCCCCCTCCCCCTCTCCCTCGAATTTA
TCTGTTTCTCCCGTTGGCCCCACCCTTTTTTTCTTTCCCCCCACTTAATT
CACTCTCCCCNCCCGGGTCTTCACCCTCTCCATTCTCCTTCTCTTCTTTA
TGGCTCCACTGTGTGGGGGGGGGGTCCCTCCTCGCCNNNTTTNTTATTTC
CTCAACTTTACGAATATAGGGGGGGTGGGGGGGTGGGTTACTGCTGGCNT
ATCTCTTTCAACATTTTTTCCCACTTCTCATCCCTCCTATTCCTACCTCT
CTCTTCACACCCGACGTGTGGTGGGGACCTCTTCGCGNATTAGATAAAAC
ACCCATCCCTCTCAAACATTTTATCCCACACCGATATTCATCCTGTTCCA
TCCTCACATTCTTTACTTTCCCACTTTCCCCTTTGTTCGGCCCAAGTACT
TCTTCTATCATCTCCCCATACCTACGCGTTGTGGGGGGGGTGTTTGCGTC
GGGCCACCTTATTTGCGGGGGGAGGGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_g23.b1 MSMg01no386_g23.b1 CHROMAT_FILE:
MSMg01no386_g23.b1 PHD_FILE: MSMg01no386_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:14 2005
         (246 letters)



>mm_chr3_59022168_59022813
          Length = 646

 Score =  460 bits (238), Expect = e-134
 Identities = 244/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaggaatatgggcagagaaggaaaggcagctgtaaacagacacaaaaggctactcggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 accaggaatatgggcagagaaggaaaggcagctgtaaacagacacaaaaggctactcggc 387

                                                                       
Query: 61  catgtaaaagaagatgcaggggaaataggcaaagcatcactagagtgcctgtcattaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 catgtaaaagaagatgcaggggaaataggcaaagcatcactagagtgcctgtcattaggc 327

                                                                       
Query: 121 ttttcgaaattaacccaggggtgctgacaccaagaccacagtgttgtaaaatacagcctt 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttttcgaaattaacacaggggtgctgacaccaagaccacagtgttgtaaaatacagcctt 267

                                                                       
Query: 181 ctaccaaaacaagcacaaagctctcatgacatctcacaacacaccacctcgttttaagtt 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 caaccaaaacaagcacaaagctctcatgacatctcacaacacaccacctcgttttaagtt 207

                 
Query: 241 gctaga 246
           ||||||
Sbjct: 206 gctaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)