Query= MSMg01no386_h02.b1 MSMg01no386_h02.b1 CHROMAT_FILE:
MSMg01no386_h02.b1 PHD_FILE: MSMg01no386_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:15 2005
(244 letters)
>mm_chr3_153435281_153435923
Length = 643
Score = 449 bits (232), Expect = e-131
Identities = 241/244 (98%), Gaps = 1/244 (0%)
Strand = Plus / Plus
Query: 1 ctgcaagagacaatgggtaagggggtctggcatagtatctatgttatagtaagaccagat 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 201 ctgcaagagacaatgggtaagggg-tctggcatagtatctatgttatagtaagaccaaat 259
Query: 61 gcatagggtcttaattgtgtttagaaatgcgtatcagggcataagggacttaaatggatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gcatagggtcttaattgtgtttagaaatgcgtatcagggcataagggacttaaatggatc 319
Query: 121 tacaggtttcttccaggtgtttattgcttctgctgtggctggagcacttcagtctcaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tacaggtttcttccaggtgtttattgcttctgctgtggctggagcacttcagtctcaggt 379
Query: 181 agcctggtccactataggagacctctcataattaatagcccttctgtaagttgacctaaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 380 agcctggtccactataggagacctctcataattaatagcccttctgtaagttgacccaaa 439
Query: 241 gcct 244
||||
Sbjct: 440 gcct 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 643
Length adjustment: 9
Effective length of query: 235
Effective length of database: 634
Effective search space: 148990
Effective search space used: 148990
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no386_h02.g1 MSMg01no386_h02.g1 CHROMAT_FILE:
MSMg01no386_h02.g1 PHD_FILE: MSMg01no386_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:15 2005
(509 letters)
>mm_chr3_153619717_153620625
Length = 909
Score = 920 bits (476), Expect = 0.0
Identities = 502/512 (98%), Gaps = 3/512 (0%)
Strand = Plus / Minus
Query: 1 tcccagtccattgatctggaatatcagcccttggagctccacctgggctcttctgggtct 60
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 885 tcccagtccattgatctggaacatcagcccttggagctccacctgggttcttctgggtct 826
Query: 61 caagctggacagaaacaaattgcaggcctttttggtttccagaattggaggagcacattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 caagctggacagaaacaaattgcaggcctttttggtttccagaattggaggagcacattt 766
Query: 121 cttataataaatttttgattaacgcagattcaataaaactacttttgaaagaacgtgaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 cttataataaatttttgattaacgcagattcaataaaactacttttgaaagaacgtgaac 706
Query: 181 ctggcacagtggtgcacacctggaacctgaaactcaagtaggaggcccatcatgggttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ctggcacagtggtgcacacctggaacctgaaactcaagtaggaggcccatcatgggttct 646
Query: 241 aggctgttcttggctacagaaagagaccttgctgcagaagag---aaaaaaatggaaagg 297
|||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 645 aggctggtcttggctacagagagagaccttgctgcagaagagaaaaaaaaaatggaaagg 586
Query: 298 aattacaaactaatgaatgaaaggaaggcagtataacagagaggaaaaataagaaagtca 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 aattacaaactaatgaatgaaaggaaggcagtataacagagaggaaaaataagaaagtca 526
Query: 358 gttaatgaagaacttcatctgtagcctttcttcccttaggcctggttgtacacaccttag 417
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gttaatgaagaacttcacctgcagcctttcttcccttaggcctggttgtacacaccttag 466
Query: 418 atcccaggagttgggaggcagactggtggatctctgtgcactggagaccagcctggccca 477
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 465 atcccaggagttgggaggcagactggtgaatctctgtgcactggagaccagcctggccca 406
Query: 478 ggccagccagagctacataagaccatctcaaa 509
||||||||||||||||||||||||||||||||
Sbjct: 405 ggccagccagagctacataagaccatctcaaa 374
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
