BAC Information

Click to search

BAC

Clone NameMSMg01-387D04
Chromosome3 (Build37)
Map Location 52,187,359 - 52,187,660
singlet/doubletsinglet
Overlap genenone
Upstream geneA630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2, Maml3, LOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1
Downstream geneLOC100039762, LOC100039832, Cog6, Lhfp, LOC100039808
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387D04.T7 (MSMg01no387_d04.b1)MSMg01-387D04.TJ (MSMg01no387_d04.g1)
ACCAG489987AG489988
length751762
length of high quality
(start - end)
452 (50 - 501)302 (83 - 384)
definitionCHROMAT_FILE: MSMg01no387_d04.b1 PHD_FILE: MSMg01no387_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:11 2005CHROMAT_FILE: MSMg01no387_d04.g1 PHD_FILE: MSMg01no387_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTACCAAGTTTTCAAAGAGGAGCTAATACCAATACTCTTCAA
ATTATTCCACAAAATAGAAACAGAAAAAAACATTGTATTCAAATTCATTT
TATGAGGCCACAGTCACCCTGATATCTAAACCACACAAAGACTCAACAAA
AAGAATTTCAGACCAAATTCTCTCATAAACATTGATGAAAAAAAAAAACT
CAATAAAATACTTGCAAACTGAATCCAAGAACACATCAAAAAAATCATCT
ACCATGATCAAGTAGGCTTCATCTCACAGATGCAGGAATGGTTCCACCAC
ACAAACAAATTGGAAAAGAAAAATCCCCACATGTTCATCTCAATAAATGC
TGAAAAAGCCTTTGACAAAAATCCAACACCCTTTCATGATAAAAGTCCTA
GAGAGATCAGGGATATAAAGCACATATCTCAACATAATACATGGATTTTA
CAGCCAGCCAATAGCCAATATCAAATTAAATGAAGATAAACTTAAAGCAA
TTCCACTGAAATTAGGGACCAGACAGAGCTACCTACTTTTCCCCTGTCTA
TTCAGNATAGTGGTTGGAACTTTAGCTACATCCATAAGACACCTAACGGA
GACCCCGAGGCATTTTCCTTACAAGGGAGGAAGCCCCAGGATTGCCTACT
GAAAAAAAATACGCTGGGGTAATAAACGCCGGGCCCCCCCCCCCCCACCC
G
CCCCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAGCTTTTGAGGAATG
GTGATGTGGCTTTCTAACTCCGGTCTCACCATGACTACAGATGACTATTT
GGCTCTGCCCTTACCCCATTGTTCTCCTCCAGTAGACGTCAAGGACTTGG
ATGCAGGTTTTCTGAAGCGCTCCTCCCTGGAATTCCCAGCCTCTGTTGAT
TCTGTGAGTAACCATCAGAGGCCGGCTTCCACTCTCTGTCATCAGATAAG
ATCCCTTTCCTCCTACAAGCCAACTGGAATTTGAACCTGAAATACCCTTA
GAAGGATATTTTCATTTCAATCACAGTCTGGCCGTAGCATCGGCCAGCCA
GGCAGGATACAGGGTCAGCACACACTCCCATTGAGAGGAAGAGTCCAGGC
CTTTGTCCTCTGGGCCTTGTCAATCACATCCACCTATCACAATGCTAAAG
GTCTCGCTCTACACCAGAATTTTTCTAGCCTCATTACTCTGAGGCTCTTA
GCTCTCTTTTCAATCCTTTAATGTCCCCCCCTTACCTGTCTTTTTCTTCT
CTACCCTTGTTCTTCCACCACCCGGCTTATCCACTTTTTTCATTTCGGCC
TTTGCCCTCGTCCCCATCTACCTCTTCACATTTCTCTTCTTTCCTTTCCC
CCTTCCACTCTAGTCGTCTTCCTCTCTCTATTTCTTTTTCCTTTTTATCC
TCCTGCTTCCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_d04.g1 MSMg01no387_d04.g1 CHROMAT_FILE:
MSMg01no387_d04.g1 PHD_FILE: MSMg01no387_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:11 2005
         (302 letters)



>mm_chr3_52187159_52187860
          Length = 702

 Score =  576 bits (298), Expect = e-169
 Identities = 301/302 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaagcttttgaggaatggtgatgtggctttctaactccggtctcaccatgactacagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ccaagcttttgaggaatggtgatgtggctttctaactccggtctcaccatgactacagat 443

                                                                       
Query: 61  gactatttggctctgcccttaccccattgttctcctccagtagacgtcaaggacttggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gactatttggctctgcccttaccccattgttctcctccagtagacgtcaaggacttggat 383

                                                                       
Query: 121 gcaggttttctgaagcgctcctccctggaattcccagcctctgttgattctgtgagtaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gcaggttttctgaagcgctcctccctggaattcccagcctctgttgattctgtgagtaac 323

                                                                       
Query: 181 catcagaggccggcttccactctctgtcatcagataagatccctttcctcctacaagcca 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 322 catcagaggccggcttccactctctgtcatcagataagatccccttcctcctacaagcca 263

                                                                       
Query: 241 actggaatttgaacctgaaatacccttagaaggatattttcatttcaatcacagtctggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 actggaatttgaacctgaaatacccttagaaggatattttcatttcaatcacagtctggc 203

             
Query: 301 cg 302
           ||
Sbjct: 202 cg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)