ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTCTGTTTACCAGGCTGTCCTGGAACTCAGAAATTTGCCTGCCTCTG
CCTCCCAAGTGCTGGGATCAAAGGTATGCACCACCACTCACAGCTTGGAC
TTCCTTCTTGAATTTCATGGGTTTTGCAAATTGTATCTTGGGTATTCTGA
GCTTCTGGGCTAATATCCACTTATCAGTGAGTGCACATCATGTTTGTTCT
TTTGTGATTGAGATCCCTCACTCGGGATGATATCCTCCAGATCTATCCAT
TTGTCTAAGAATTTGATAAATTCATTGTTTTTAATTGCTGAGTAGTACTC
CACTGTGTAAATGTACCACATTTTCTGTATCTATTCCTCTGTTGAGGGAC
ATCTGGGTTCTTTTCAGCATCTGGCTATTATAAATAATGCTGCTAGGAAC
ATAGTGGAGCATGTGCCCCTATTATATGTTGGAGCCACTTCTGGGTATAT
CGCCCATGACTGCCATTTGCTGCCGTTTCCGGTAGCACCCTTGTCCTACC
CTCCGCGGGAACCCTCACCTGAAATCCTCCAGCGCTTTGTCCTCCCTTTG
CCTCCCTTTCCCCCATGTCCGACGCTTTCCTTTTTTTTTTCCCCCCTCCC
TTATCCCCTCTTTTCCTCCCCACCCCCTCCTTTCCTTTTCCTTTCTTCCA
TCCTCCCCTCTCTCTCCCTTTCCCCCCTCCCTTCTCCCTCCCCCTTCTCC
CCCCCCTACCCCACTCCTATCCTCCTCCTCCCCCCTA

NNCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTAATGATTAGAATATT
TGTTGCACATAAGCTATTAGTTAATGCTGCGTAAGACAAACGCTCCCCTG
CATATTTCAATTATTGCTATGGAAAGCCCTATTTTTTTTTCCAGAATTAG
CAAAACAGATGCTGGGCCATTGATCAAAATTCATTTATGTAATTTTAGGT
CACCCAGGTTCATTCTCTCAGCATGGGTTAAAAAACAACCTCTGCCTTTA
CATTGAAAGGTAATTTGGGGTGAGCAATATCAGTATGTGATGTGTCTAGA
AGTTGGGGTATGTTGCAACAATGGTTTGGATATTGTAAGATGGGTTTCCA
CCAAAAGGCCTTTCATCTGAAATGTTCAAGTTTGTCTTAATTTAGAAGTG
AGGATCAAGTAAGTCATGCTTTTAAAAAATGGAGCAGCAAAATGTTTGAG
ATGAGGGTTTTGTGCTAATAAGCACTGGGAGATCTTCCGCAATTTATAAA
TTACAATGCTTACTGCAGTCTTATTAATGGCATCCTTCCACCATGAGAGT
CACCCCCCTATTTGCTTTGGACTTCTGGCCGAGACAGTTGTAAAACAACT
ACAAGCTCCGCTTTTTATTTTTTGCCCCCCCCTCCATCGTTGTCATTACT
CCTGTCACTCGTCCCTCCCCCCCCTTCCCTCCCCTTACTCTCTTATCTCT
CTCCGCTCCTTC

Query= MSMg01no387_i09.g1 MSMg01no387_i09.g1 CHROMAT_FILE:
MSMg01no387_i09.g1 PHD_FILE: MSMg01no387_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:36 2005
         (429 letters)



>mm_chr3_6440133_6440964
          Length = 832

 Score =  781 bits (404), Expect = 0.0
 Identities = 424/432 (98%), Gaps = 3/432 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttaatgattagaatatttgttgcacataagctattagttaatgctgcgtaagacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttaatgattagaatatttgttgcacataagctattagttaatgctgcgtaagacaaa 260

                                                                       
Query: 61  cgctcccctgcatatttcaattattgctatggaaagcccta---tttttttttccagaat 117
           | |||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||
Sbjct: 261 cactcccctgcatatttcaattattgctatggaaagccctatttttttttttttcagaat 320

                                                                       
Query: 118 tagcaaaacagatgctgggccattgatcaaaattcatttatgtaattttaggtcacccag 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagcaaaacagatgctgggccattgatcaaaattcatttatgtaattttaggtcacccag 380

                                                                       
Query: 178 gttcattctctcagcatgggttaaaaaacaacctctgcctttacattgaaaggtaatttg 237
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 gttcattctctcagcatgggttaaaaaacaacctctgccttcacattgaaaggtaatttg 440

                                                                       
Query: 238 gggtgagcaatatcagtatgtgatgtgtctagaagttggggtatgttgcaacaatggttt 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggtgagcaatatcagtatgtgatgtgtctagaagttggggtatgttgcaacaatggttt 500

                                                                       
Query: 298 ggatattgtaagatgggtttccaccaaaaggcctttcatctgaaatgttcaagtttgtct 357
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 ggatattgtaagatgggtttccaccaaaaggccttttatctgaaatgttcaagtttgtct 560

                                                                       
Query: 358 taatttagaagtgaggatcaagtaagtcatgcttttaaaaaatggagcagcaaaatgttt 417
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 taatttagaagtgaggatcaagtaagtcatgcttttaaaaactggagcagcaaaatgttt 620

                       
Query: 418 gagatgagggtt 429
           ||||||||||||
Sbjct: 621 gagatgagggtt 632


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 832
Length adjustment: 9
Effective length of query: 420
Effective length of database: 823
Effective search space:   345660
Effective search space used:   345660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)