BAC Information

Click to search

BAC

Clone NameMSMg01-387K18
Chromosome3 (Build37)
Map Location 77,178,393 - 77,178,795
singlet/doubletsinglet
Overlap genenone
Upstream geneFstl5, LOC100041625, LOC100041635
Downstream geneDnmt3a-ps1, EG626461, LOC667526, LOC626479
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387K18.T7 (MSMg01no387_k18.b1)MSMg01-387K18.TJ (MSMg01no387_k18.g1)
ACCAG490350AG490351
length768784
length of high quality
(start - end)
408 (47 - 454)460 (76 - 535)
definitionCHROMAT_FILE: MSMg01no387_k18.b1 PHD_FILE: MSMg01no387_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:47 2005CHROMAT_FILE: MSMg01no387_k18.g1 PHD_FILE: MSMg01no387_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTTTCAGCTGCCTTAGTTGATTACAACGGTCACTGACACATTTC
TGGCAGTCTGCAACTTTCATGGTAAGATTTCACTTACAACTCAGTATTTA
CAAATCTTTTGTTTTCAAATTCTTCATTTTCCTTCTGGTTGAGAAGGAAG
TGAGCACACGCTCAAGATCTTGACTTGTTAGAAATAAAGTTAGAAGTGCT
TTAACTGTATATTTTCTGTCTTTTCCTATGAAAGTCTTTCTTTACTATTG
CTTTGTTTACATTTGTGGAGTAAACTGTATGTATATACTTGTGCATAAAG
TTTAATGAACAAATGAAATTAGTGAGCATTTTTTTTTTGTTTTCTCCTCT
CAAGAGGAACAAGAACATCTTAGGTAGAGCCTTAAAATCTTCCTAGTATT
TAACCATACCAACACTGTTCACAATCTCAAATCCCAGTCTTATCTGAGAT
TAAAGCACTCCCTTTATTATGAGATCCCATAACGTACGAAACCAACTACA
TATTTTCCACATATAAAATCACCCCCCCTGACATTAATAATGGCCCAATT
TCCAAAAACTTGCCCTTTCCTGGGTTTGGTCCCTCCCCAAACTCAAACCC
TCCAGGGAAAAAACTCTTACTCCTTTCCCCTTTGGGCCCCACAATCCACG
CGCCTTTAATTCCCTACATCCGCGCCACCACATAACTCCGTACCCGCTCC
TACCCCTCTTTTCCCCTG
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTTAGTTCTGTACCCCATTTT
TAATAGGGTTATTTGCTTCTCCGGAGTCTAACTTCTTCAGTCCTTTGTAT
ATATTGGATATTAGGCCTCCATCAGATTTAGGACTGGTAAAGATCTTTTC
CCCAGCTGTTGGTTTCCTTTTTGTCCTATTGACAGTGTCCTTTGCCTTAC
AGAAGCTTTGCAATTTTGTGAGGGCCCATTTGTCAATTTTTGATCTTACA
GCACAAGCCATTGGTTTTCTGTTCAGGAATTTTTCCCCTAGCCCATATGC
TTCAGGCTCTTCCCCACTTTCTTTTCCATTATTTTCCCTGTATCAGGATT
AATTTAGAAGTCCTTGATCCATCTGGACTTGAGCTTTGTACAAGGAGATA
AGAATGGATCAATTTGCATTCTCCTACTTGCTAACAGCTACTTGAGTCAG
CACCATTTGTTGAAAATACTGTCTTTTTTTCCATTGGATGGATTTAGCTC
TTTGTCAAAATAAGTGGACTTAGGTGCATGGTTTTATTTCTGGGGCTTTA
GTTCCATTCCTTTGGATCATCTGGCTGGCCCCTACCCGGGGAGGTTTTAA
TCGAAATGGCTCTGGACACACCTTGAGGGCATGGTTTGGGGATTCTCGAT
TTTCTCCTTTTGTTCCAAAATTTTTTTTCCCCAGGGGGCTTCCTGTCTTA
CAATTAACTTTTCATTTGCCTTTTCCCTCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_k18.b1 MSMg01no387_k18.b1 CHROMAT_FILE:
MSMg01no387_k18.b1 PHD_FILE: MSMg01no387_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:47 2005
         (408 letters)



>mm_chr3_77178191_77178995
          Length = 805

 Score =  762 bits (394), Expect = 0.0
 Identities = 402/406 (99%), Gaps = 3/406 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattctctttcagctgccttagttgattacaacggtcactgacacatttctggcagtc 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ggaattctctttcagctgccttagttgattacaacggtcactgacacatttctggcagtc 546

                                                                       
Query: 63  tgcaactttcatggtaagatttcacttacaactcagtatttacaaatcttttgttttcaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tgcaactttcatggtaagatttcacttacaactcagtatttacaaatcttttgttttcaa 486

                                                                       
Query: 123 attcttcattttccttctggttgagaaggaagtgagcacacgctcaagatcttgacttgt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 attcttcattttccttctggttgagaaggaagtgagcacacgctcaagatcttgacttgt 426

                                                                       
Query: 183 tagaaataaagttagaagtgctttaactgtatattttctgtcttttcctatgaaagtctt 242
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tagaaataaagttagaagcgctttaactgtatattttctgtcttttcctatgaaagtctt 366

                                                                       
Query: 243 tctttactattgctttgtttacatttgtggagtaaactgtatgtatatacttgtgcataa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tctttactattgctttgtttacatttgtggagtaaactgtatgtatatacttgtgcataa 306

                                                                       
Query: 303 agtttaatgaacaaatgaaattagtgagcattttttttttgttttctcctctcaagagga 362
           |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||
Sbjct: 305 agtttaatgaacaaatgaaattagtgagcattttttt---gttttctcctctcaagagga 249

                                                         
Query: 363 acaagaacatcttaggtagagccttaaaatcttcctagtatttaac 408
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 acaagaacatcttaggtagagccttaaaatcttcctagtatttaac 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 805
Length adjustment: 9
Effective length of query: 399
Effective length of database: 796
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)