BAC Information

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BAC

Clone NameMSMg01-388D01
Chromosome3 (Build37)
Map Location 51,766,464 - 51,766,892
singlet/doubletsinglet
Overlap genenone
Upstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2, Maml3
Downstream geneLOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388D01.T7 (MSMg01no388_d01.b1)MSMg01-388D01.TJ (MSMg01no388_d01.g1)
ACCAG490744AG490745
length875754
length of high quality
(start - end)
40 (67 - 106)512 (79 - 590)
definitionCHROMAT_FILE: MSMg01no388_d01.b1 PHD_FILE: MSMg01no388_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:28 2005CHROMAT_FILE: MSMg01no388_d01.g1 PHD_FILE: MSMg01no388_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGCAATAAAAATACTATATTCAGAAAACCGCGGAATTCAAAAGATGTT
ACCACAACAAGTCCCATAGATTTGCCTATCTTTGATCTAGTATAACAAGT
GTCACATGCCTGCTTTGTGTGTGTGTGAGTATGTGTGTGTGTGTGAGAGT
GTGTGTGTGAGTCAAAAAAACCCCCCACACAAATCACAACCCTCCCGCCC
TCACAAACCCAAACAACACAACACAAACACACCCACCATCCAATTACATA
CCCCCCCACCCACACCCCCACCCACACACCAAACCCCCCCAAACACCCCA
ACACCCCACCCCCTCTCCTCCCCCCCAAAAAACCCCCCCCCAAACAAAAA
ACTAACTACCCCCCCCCACAAACACCAACACCCACAACACCCACACCCCC
CACCACAAAACCCCCACCCCCACCACCCCCCCCCAACCAAACACCCACCC
CACCCCCACCCCCCACACACCAAACCCACACCCCCACACCACCACCCACA
CCAAACCCCACCATACCACACCCCCTCCAAACCACAACCCCCCCACCACC
TATAACCACCCCACAAACCACCTCCCCCCACACCACACCACAAAACCCAC
AAACCAAACACAAAAATAACCAACACCCAACCCAACACAACCCACCCACA
TATACCCCCACACTAACAAAACCAACAACCCAATCCCCACCACCCCACAC
CTCTTACCCCCCACCACACAACAACAACCACACCCACACACACACAACCC
ATCCACCACACCTAAAAACCCAACACACACAACCCCACCACACCCACCAC
CCTCCCACCCCTCACACATACCTCCTCCCCCCCACACACCACACCACTCA
CACAACCAAACACCCACAAACCCCG
CCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGTGCCATAGTTCTTGTTTC
TGCTCCCCCTTAATATGGTTTGCTTCTTTCTTTTAAAAAGATAATTTCTT
ACACTTAATTATTTTATATTTGTAAGCATTTTATCTGCATATCTGTATGT
GCATCATGTGCGTGCCTAATACCCAAAGGAGGCCAGAAGAAGGTTAGAAT
TCCCCCTGAAATTGCAGTTATGGGTGGTTATCAACCTGGGTTAGGAATTG
AACCCAGGTCCTCTGTAAGACCAATAAATGCTCTAAACCATTGACCCATC
TCTCCAGCCCCTTGATTCATTCTCCTTATGTTAAAGACATGTCCTATGAT
TCTGTCTTTAAATATTTCTCCTTGCTATATCTGGAACTCTGTTCACAGTT
CCTTCCAGGATTTTCCCCAAAGTTAATTCATCAAGTCCCCAAAGAAGCAA
CGCCAGCATCATTTCTAAATGTCCTCAGCCTAAGGTGGCACAACAATGGC
CGAGTAGGCCTGGGGACGGCAGGGCAAGATTGGGTACTGTTCCCAGCCCG
TGAGTCTTATTAACACCCCATGCCATGTTCCTTTCATTTCGAGCAGAAAC
TGATAAATTGAAGTTTTGATCCAATCGCAATTTGTCTCTCGCATTTCTAG
CAGGAGCCCATGTTATGATCTCGGGCAGCGCTGGCTCTCGGCATCCCACC
CCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_d01.g1 MSMg01no388_d01.g1 CHROMAT_FILE:
MSMg01no388_d01.g1 PHD_FILE: MSMg01no388_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:28 2005
         (512 letters)



>mm_chr3_51765981_51766892
          Length = 912

 Score =  775 bits (401), Expect = 0.0
 Identities = 422/429 (98%)
 Strand = Plus / Minus

                                                                       
Query: 84  ttttatatttgtaagcattttatctgcatatctgtatgtgcatcatgtgcgtgcctaata 143
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 ttttatatttttaagcattttatctgcatatctgtatgtgcatcatgtgcgtgcctaata 853

                                                                       
Query: 144 cccaaaggaggccagaagaaggttagaattccccctgaaattgcagttatgggtggttat 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 cccaaaggaggccagaagaaggttagaattccccctgaaattgcagttatgggtggttat 793

                                                                       
Query: 204 caacctgggttaggaattgaacccaggtcctctgtaagaccaataaatgctctaaaccat 263
           |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 792 caacctgggttaggaattgagcccaggtcctctgtaagaccaacaaatgctctaaaccat 733

                                                                       
Query: 264 tgacccatctctccagccccttgattcattctccttatgttaaagacatgtcctatgatt 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tgacccatctctccagccccttgattcattctccttatgttaaagacatgtcctatgatt 673

                                                                       
Query: 324 ctgtctttaaatatttctccttgctatatctggaactctgttcacagttccttccaggat 383
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ccgtctttaaatatttctccttgctatatctggaactctgttcacagttccttccaggat 613

                                                                       
Query: 384 tttccccaaagttaattcatcaagtccccaaagaagcaacgccagcatcatttctaaatg 443
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 612 tttccccaaagttaattcatcaagtccccaaagaagcaatgccagcatcatttctaaatg 553

                                                                       
Query: 444 tcctcagcctaaggtggcacaacaatggccgagtaggcctggggacggcagggcaagatt 503
           |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 552 tcctcagcctaaggtggcacaacaatggccgagtagacctggggacagcagggcaagatt 493

                    
Query: 504 gggtactgt 512
           |||||||||
Sbjct: 492 gggtactgt 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)