Query= MSMg01no388_d08.b1 MSMg01no388_d08.b1 CHROMAT_FILE:
MSMg01no388_d08.b1 PHD_FILE: MSMg01no388_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:29 2005
(583 letters)
>mm_chr3_59386308_59387290
Length = 983
Score = 1044 bits (540), Expect = 0.0
Identities = 549/552 (99%)
Strand = Plus / Minus
Query: 28 ggaattccttcatatattgtggaggctagtgaatttataatcttcagagcaagtggatgg 87
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ggaattccttcatatagtgtggaggctagtgaatttataatcttcagagcaagtggatgg 720
Query: 88 ggtgacctcaagaaaagtttatagtcctctttgatagatatggcaaagcaatctataact 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ggtgacctcaagaaaagtttatagtcctctttgatagatatggcaaagcaatctataact 660
Query: 148 gattaagtaatgattggaaatcttcagcaagagaatagaatatgagccttttaaaatatg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gattaagtaatgattggaaatcttcagcaagagaatagaatatgagccttttaaaatatg 600
Query: 208 ttaatacatatatgagcaatgactgagtaggttcaaattttgtaggatgaacaaagtaga 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ttaatacatatatgagcaatgactgagtaggttcaaattttgtaggatgaacaaagtaga 540
Query: 268 aattaagcaactgaaaaaacagggagtgctaaagaatgaggaaagtagataatgcttgtc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 aattaagcaactgaaaaaacagggagtgctaaagaatgaggaaagtagataatgcttgtc 480
Query: 328 actctatagaaaacagaaaatacaacagagtatttaagtacactgaatagaaattgccta 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 actctatagaaaacagaaaatacaacagagtatttaagtacactgaatagaaattgccta 420
Query: 388 aaccaataggaaacagaaaaaaattgtgattaaaagcatgaatacaaagataaagaaaat 447
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aatcaataggaaacagaaaaaaattgtgattaaaagcatgaatacaaagataaagaaaat 360
Query: 448 taaaccttctaggtaaaataataaatgtgttaaatatgtatcttataaactaacacgttg 507
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 359 taaaccttctaggtaaaataataaatgtgttaaatatgtatcttataaactaacacattg 300
Query: 508 taaacacaaaataatcatagaatttcataactgaaacatactaagcatttcaataagtat 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 taaacacaaaataatcatagaatttcataactgaaacatactaagcatttcaataagtat 240
Query: 568 gaaaagtactac 579
||||||||||||
Sbjct: 239 gaaaagtactac 228
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_d08.g1 MSMg01no388_d08.g1 CHROMAT_FILE:
MSMg01no388_d08.g1 PHD_FILE: MSMg01no388_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:29 2005
(654 letters)
>mm_chr3_59419356_59420410
Length = 1055
Score = 862 bits (446), Expect = 0.0
Identities = 606/668 (90%), Gaps = 27/668 (4%)
Strand = Plus / Minus
Query: 1 cttaac-agataccatcatatttctttctcaaagtgtaaacagagaaataaatacatctc 59
|||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 855 cttaacaaggtaccatcatatttctttctcaaggtgtaaacagagaaataaatacatctc 796
Query: 60 ccaagaacagaagaaaggcaaatatccctcaggagtgaccactgtacac--tacgttaca 117
|||||||||||||||||||| ||||||||||| |||||||||||||||| || ||| |
Sbjct: 795 ccaagaacagaagaaaggcagatatccctcagcagtgaccactgtacactgta--ttata 738
Query: 118 gtctcttaccttttacactttatgacatgctctgggcacagaattctgagcatcttcctg 177
|||||||| || |||||||||||||||||||||| ||| ||||||||| || |||||||
Sbjct: 737 gtctcttatctcctacactttatgacatgctctggacacggaattctgaacagcttcctg 678
Query: 178 ttcctgcccatacttggtagcttaacatttagattgcatcctgatctttatttctggtac 237
|||||| |||||||| ||||||||||| ||||||||||| |||||||| |||||||| ||
Sbjct: 677 ttcctgtccatacttagtagcttaacagttagattgcattctgatcttcatttctggcac 618
Query: 238 cttctttctcaccttacttgccttgaaaatatagctacagaaattattgatcaacatttg 297
||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 617 cttctttctcaccttccatgccttg-aaatatagctacagaaattattgatcaacatttg 559
Query: 298 tgacatattgaccacctaagaataaacctttggttgaacattgaagtgtaaaactttcat 357
|||||||||| ||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct: 558 agacatattgatcacctaagaatcaacctttggttgaacattgaagtgtagatctttcat 499
Query: 358 tcctaattttataattttgtccactttctgcctctacttggttacatatgtttctctgaa 417
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 498 tcctaattttataattttgtccactttc-acctctacttggttacatatgtttttctgaa 440
Query: 418 ctttgaaaattctcacaaacattaatttttcactaaaatatttt-atttttctctaatgt 476
||||||||| ||||| ||||||||| |||||||||||||||||| ||||||||| |||||
Sbjct: 439 ctttgaaaactctcataaacattaa-ttttcactaaaatattttaatttttctccaatgt 381
Query: 477 gtttcttcatggttat----attttatctg--tttatgtctaacatgatggatggcaatt 530
||||||||||| |||| ||||| || ||||||| ||||||||||||||||||||
Sbjct: 380 gtttcttcatgattattgtgttttta--tgattttatgtttaacatgatggatggcaatt 323
Query: 531 tatacatttatatat----aatagcaatatgttttgctatctagaaggaacactgacatt 586
||||||||| | | ||| ||||| ||||||||||||| ||||||||||||||||
Sbjct: 322 tatacattt---t-tggtgaat--caataagttttgctatctaaaaggaacactgacatt 269
Query: 587 gctgcctgtgaagcattttcctttgctctcctatctaattcttttaagttgattatgact 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gctgcctgtgaagcattttcctttgctctcctatctaattcttttaagttgattatgact 209
Query: 647 ttattcca 654
||||||||
Sbjct: 208 ttattcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1055
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1045
Effective search space: 672980
Effective search space used: 672980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
