Query= MSMg01no388_g05.b1 MSMg01no388_g05.b1 CHROMAT_FILE:
MSMg01no388_g05.b1 PHD_FILE: MSMg01no388_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:43 2005
(539 letters)
>mm_chr3_47193193_47194132
Length = 940
Score = 853 bits (441), Expect = 0.0
Identities = 510/537 (94%), Gaps = 8/537 (1%)
Strand = Plus / Minus
Query: 4 ggaattctatattcatgctctactttctgacaagagtggtgacaacaggttataacattt 63
||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 839 ggaattctatattcatgttctactttcggacaagagtagtgacaacaggttataacattt 780
Query: 64 aagggagtctggggggaaactcctgatgaacaattcaaggagcagtgatccgttagccaa 123
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 779 aagggagtctggggggaaactcctgatgaacaattcaag-------gatccgttagccaa 727
Query: 124 actaaagacataactggagatcaataagactgtagtcttcttgagcaaacatatcacttg 183
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 726 actaaagacataactggagatcaataagactctagtcttcttgagcaaacatatcacttg 667
Query: 184 atttgccttcatttccatatatgggcaatcatatttaacaacaaaattatgatatttttc 243
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 666 atttgccttcattttcatatatgggcaatcatatgcaacaacaaaattatgatatttttc 607
Query: 244 taataata-ttttatgacatgcattagagttttatctggcatgaagagtagatcaagctg 302
|||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 606 taataatatttttatgacatgcattggagttttatctggcatgaagagtagaacaagcca 547
Query: 303 aatgcaaattggataaggttgtttatttgaagatgaaatgttttcctcaaattcattaga 362
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 546 aatgcaaattagataaggttgtttatttgaagacgaaatgttttcctcaaattcattaga 487
Query: 363 aaggatattcgtataaaaatttgatgcaggaatgaatatatagaacttagaagtattaag 422
| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 atggatatttgtataaaaatttgatgcaggaatgaatatatagaacttagaagtattaaa 427
Query: 423 gaatatttttgggaaagttgtgacaaagtaactttatgaacagacacattatggaataga 482
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 426 gaatatttttgggaaagttgtgacaaagtaactttatgaacagacacattacggaataga 367
Query: 483 aataaattttcttcttgaaaattcgagtagtcaaaataaaggctctatctattcctt 539
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 366 aataaattttcttcttgaaaatttgagtagtcaaagtaaaggctctatctattcctt 310
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 940
Length adjustment: 10
Effective length of query: 529
Effective length of database: 930
Effective search space: 491970
Effective search space used: 491970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_g05.g1 MSMg01no388_g05.g1 CHROMAT_FILE:
MSMg01no388_g05.g1 PHD_FILE: MSMg01no388_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:43 2005
(476 letters)
>mm_chr3_47018661_47019538
Length = 878
Score = 851 bits (440), Expect = 0.0
Identities = 468/478 (97%), Gaps = 2/478 (0%)
Strand = Plus / Plus
Query: 1 accagaaaggagatgaaaggtgtatttgatgtttgaaggacagggaagattaaattcacg 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 accagaaaggagatgaaaggtgtatttgatgtttgaaggactgggaagattaaattcacg 260
Query: 61 cctaacttgtggaatgaaacatttccccattgatgaaggaccttgagataaaattacact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctaacttgtggaatgaaacatttccccattgatgaaggaccttgagataaaattacact 320
Query: 121 tttagtactgtgaagttctgactggaaagaatgttttc--ttttttttttttaagatgat 178
||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||
Sbjct: 321 tttagtactgtgaagttttgactggaaagaatgttttcttttttttttttttcagatgat 380
Query: 179 ttacatagcatttttattggtttactttaaagttctgtggccttcctttaagtcagatat 238
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 ttacatagcatttttattggtttactttaaggttctgtggccttcctttaagtcagatat 440
Query: 239 ggtatgtctttgagtcagcctgttgctttctttcttggtgcagtctattctagaagggaa 298
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggatgtctttgagtcagcctgttgctttctttcttggtgcagtctattctagaagggaa 500
Query: 299 ggcctattctcagaatactttatacttgagaactgatcatacattttctatatttttaaa 358
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcctattctcagaattctttatagttgagaactgatcatacattttctatatttttaaa 560
Query: 359 gttcattcttcatcagcatagaacaggactaaattccaggctatatttacctatgtccaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttcattcttcatcagcatagaacaggactaaattccaggctatatttacctatgtccaa 620
Query: 419 atattgctatagcccattttattttattccttctactgaaatgaagacacttgagcag 476
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atattgctatagtccattttattttattccttctactgaaatgaagacacttgagcag 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 878
Length adjustment: 10
Effective length of query: 466
Effective length of database: 868
Effective search space: 404488
Effective search space used: 404488
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
