BAC Information

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BAC

Clone NameMSMg01-388G24
Chromosome3 (Build37)
Map Location 7,649,643 - 7,650,064
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039349, Olfr289-ps1, EG667801, Pkia, LOC667807, 3110050N22Rik, Il7
Downstream geneLOC620822, LOC633072, LOC545500, LOC620966, Stmn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388G24.T7 (MSMg01no388_g24.b1)MSMg01-388G24.TJ (MSMg01no388_g24.g1)
ACCAG490933AG490934
length811791
length of high quality
(start - end)
423 (45 - 467)244 (77 - 320)
definitionCHROMAT_FILE: MSMg01no388_g24.b1 PHD_FILE: MSMg01no388_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:46 2005CHROMAT_FILE: MSMg01no388_g24.g1 PHD_FILE: MSMg01no388_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TGAGCACAGCACAAATGAAAAAATGCTAATAAACTAAGGTAGAACTCACT
GACAACAGCAGAGAAATGTCCTATGGATAAAGGTAAAAGACAAGGAAGCA
TGTGTGTGTTGGCTGTTGCAAACAGTGAGCAAACATAACACAAACATTTC
TGTCAACAAAGGGTAACCACATTGGTTTGAAGTTCAGATTACACTACTTG
TGTTGATTTAGCAAACAAAATATGACATGCATAAAATTCTTCAGTAAAAT
GAAACAGAAAGGAGACATTATAAACAGCGTAAAATAATATGATTAATTCT
GTAAGCAGAAAAACAGAAATGCTCTAAAGAAGGTTAGAAGAGAGCTAATA
TCCAAAATATATAAAGAAATCAATAAGTTAGACATGAAAACTCAAATAAC
TCAATTAAAAAGTGGGGTGCAGAACTAAAAAGAGAATTTCTAACAAAGGA
AACGCCAATGGGCACAAAACAAACCCAAACCNAACCAAACAACCCAAAAA
CAAGCCAACCAAAACCCCCCAAATGTTTAATGGTGGTTTAGCCCTCCCCG
AAAAATGAAAACCAACCATGACTTTGAAATTCTACCCTCCAGCCCCTCCC
ATAAGCCAAGAAAAAAAACCCCGGGGACCCCCCAATGCTGGCCTGGTTTG
AACTAAAAGGGGAAACACCCTCCCCCGCCCGGCGGGAAAGGGCAACACTG
TTCAAAACCCCCCTGGAAAACCCACCTGGGCCGGTCCCTCTCAAAAAATT
GGGGATACCCC
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACTCTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCTTTATATATTGGACATAGTACTACCGGAGGA
TCCAGCAATACCTCTTCTGGGCATATATCCAGAAGATGCCCCAACTGGTA
AGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCCAGGGACAGCATCCTAATTAACAAAATCAGAAA
TGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAACACCATCAG
ATCCTTCTACAAAAAGGTATACTCAACAAACTGGGAGAACTTGGATGAAA
TGGACAAGTTTCCAAACAGATTACGGGTACGAAAGTTAAATCCAGATCAG
GGTAATTATCTTAACAGGTCCAATATCCCGAAAGGAAAAAAAAACAGCCT
TTTAAATTCCCCTCCCCAAATATCCCCCCAACCCTTGGGGTTTTTCTCCA
AAACTATTATAACCCCCCAAAAAAAATATCCCCGTCTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_g24.b1 MSMg01no388_g24.b1 CHROMAT_FILE:
MSMg01no388_g24.b1 PHD_FILE: MSMg01no388_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:46 2005
         (423 letters)



>mm_chr3_7649443_7650267
          Length = 825

 Score =  781 bits (404), Expect = 0.0
 Identities = 417/422 (98%), Gaps = 2/422 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcctgagcacagcacaaatgaaaaaatgctaataaactaaggtagaactcactgaca 60
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcctgagcacagtagaaatgaaaaaatgctaataaactaaggtagaactcactgaca 260

                                                                       
Query: 61  acagcagagaaatgtcctatggataaaggtaaaagacaaggaagcatgtgtgtgttggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagcagagaaatgtcctatggataaaggtaaaagacaaggaagcatgtgtgtgttggct 320

                                                                       
Query: 121 gttgcaaacagtgagcaaac--ataacacaaacatttctgtcaacaaagggtaaccacat 178
           ||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||
Sbjct: 321 gttgcaaacagtgagcaaacagataacacaaacatttctgccaacaaagggtaaccacat 380

                                                                       
Query: 179 tggtttgaagttcagattacactacttgtgttgatttagcaaacaaaatatgacatgcat 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtttgaagttcagattacactacttgtgttgatttagcaaacaaaatatgacatgcat 440

                                                                       
Query: 239 aaaattcttcagtaaaatgaaacagaaaggagacattataaacagcgtaaaataatatga 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaattcttcagtaaaatgaaacagaaaggagacattataaacagcgtaaaataatatga 500

                                                                       
Query: 299 ttaattctgtaagcagaaaaacagaaatgctctaaagaaggttagaagagagctaatatc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaattctgtaagcagaaaaacagaaatgctctaaagaaggttagaagagagctaatatc 560

                                                                       
Query: 359 caaaatatataaagaaatcaataagttagacatgaaaactcaaataactcaattaaaaag 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaaatatataaagaaatcaataagttagacatgaaaactcaaataactcaattaaaaag 620

             
Query: 419 tg 420
           ||
Sbjct: 621 tg 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 825
Length adjustment: 9
Effective length of query: 414
Effective length of database: 816
Effective search space:   337824
Effective search space used:   337824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)