BAC Information

Click to search

BAC

Clone NameMSMg01-388I08
Chromosome3 (Build37)
Map Location 20,108,197 - 20,108,432
singlet/doubletsinglet
Overlap genenone
Upstream geneMtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg
Downstream geneCpa3, EG664965, LOC100040283, Cpb1, Agtr1b, EG665094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388I08.T7 (MSMg01no388_i08.b1)MSMg01-388I08.TJ (MSMg01no388_i08.g1)
ACCAG490997AG490998
length776754
length of high quality
(start - end)
506 (34 - 539)575 (79 - 653)
definitionCHROMAT_FILE: MSMg01no388_i08.b1 PHD_FILE: MSMg01no388_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:52 2005CHROMAT_FILE: MSMg01no388_i08.g1 PHD_FILE: MSMg01no388_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGTTT
ATATCTGTACCCTTATTTCATTGGATTATTTATTTTCTTGACACCTAGTT
TTGTGAGTTGTTTATATATTTCTGATATTAGTACTTTATTGAATATGGAG
TTGCTAAAACATCTCTTCCCACTCTCTAGGCTGCTACTTTTACCTTTGCT
TTACAGAAGGATTTCGGTTTCATGAGGTCCTATGCATTAGTTGTTGATCT
TAGTGCCCATGCGTGCTCATGATGTCCTGTTCAGAAAGTCTTCTGTGCTA
ATGTATTCAAGAGTATTTCACACCAGGCAGTGATGGCACATTCCTTTAAT
CCCAGCATTTGCAAGGCAGAAGCAGGCAGATTTCTGAGTTCAAGGCCTGC
CTGCTATAGAGTGAGTTCCAGGACATCCAGGGCTATACAGAGAAACCCTG
TCTCGGGAAACAAAACAAAACAAAAAACAAAAAGAAAAATAAAAAAATAA
ATAAAAACCTACCAATACAAAAGGCTTGAGTTCCTATTTTGTCTGTAGAC
TTTTAAATTTTCCTTTTTGTTTTTCTAACTACCAAGTTGGATACCAGTCA
AGAGACCGAAGGTACTTATATGACATTACTGACTTTCTAATACCGTAACC
AGAATAGTTGGAATGAATGACATTCCAGAAGCATTTTAACAAATACATTG
AAATCTAAACCTTTCTTCCTAGGCAACCCTATAATTAATCCAAGGCCTCC
TCTCACCCCCCCCTGGCCGGTGCAAT
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGTGGGACAATCTCTGGAT
GGCCCTTTTCTTCAGCCTCCATTTCTAATCTGGATCTATGATTGTGGGGT
GCTGATATGTTACATGTCTAGAGCCAATTAGCTGAATCTAATTTTTTTAA
TCATCAAATTGCTTTTATTGCTCACTTTTCTGTTTGACCTAACAACTTAG
TGACTCTTTGTGGATTTGAGCTTCCATCCAAAGTACTATATGAAACCTGC
AGAAGGAATTTTTATGCTTATATTCAGCATGCCTGCCTGAGTCTTACAAT
TTTAAAAAGCAATAAAATATGTGATGTTATTTGTTCTGTTTCTAGGAAAA
CATTATGGGGGCTGCACACATGGCTCAGTGGCTATGGGCACGGACTGCTC
TTCTGGAGGTCCTGAGTTCAATTCTAGCAACCACATGGGGTGGCTCACAA
CCATCTGTAATGGGATCCAATGCATACTCTTCTGGTGTGTGTCTGAAGAC
AGCTACAGTGTACTGATATAAACAAAAATGAATAAATAATTTTTAAAAAA
GAAAACATTATGAAATTATTACCATATTGGAGTGTTGTATTTAGAATACT
AAATGGAATTTGTGCTCTTTGCCCATGGCCCCTTATGTTTGGCTCCTGAA
TAAACTCTATTATACTCTTTTTGAATTGACCCTTGCGGGTTTATAACAAC
CTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_i08.g1 MSMg01no388_i08.g1 CHROMAT_FILE:
MSMg01no388_i08.g1 PHD_FILE: MSMg01no388_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:53 2005
         (575 letters)



>mm_chr3_20107997_20108972
          Length = 976

 Score =  426 bits (220), Expect = e-123
 Identities = 232/236 (98%), Gaps = 1/236 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaggtgggacaatctctggatggcccttttcttcagcctccatttctaatctggatcta 60
           ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 201 tcaggtgggacaatctctggatggcccttttcttcagactccatttctaatccggatcta 260

                                                                       
Query: 61  tgattgtggggtgctgatatgttacatgtctagagccaattagctgaatctaattttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgattgtggggtgctgatatgttacatgtctagagccaattagctgaatctaattttttt 320

                                                                       
Query: 121 aatcatcaaattgct-tttattgctcacttttctgtttgacctaacaacttagtgactct 179
           ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 aatcatcaaattgctatttattgctcacttctctgtttgacctaacaacttagtgactct 380

                                                                   
Query: 180 ttgtggatttgagcttccatccaaagtactatatgaaacctgcagaaggaattttt 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtggatttgagcttccatccaaagtactatatgaaacctgcagaaggaattttt 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 976
Length adjustment: 10
Effective length of query: 565
Effective length of database: 966
Effective search space:   545790
Effective search space used:   545790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)