XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CGAAGCCTGACAAATAGAAAGTGGGAGAAACAGCAAGAATCATATATAAA
AACACAAAACAAACAGGAGATAAGGATAATATCAAATTTCCTGTGAAATC
AATCATTTCATGGGAACAAAATTCTCAAAGTAATAAAAAAATATCATAAT
CAGACTGCCAAACTAGATATTATACATATACACACATTATATAGGTGTGG
AGATACCAAGTTTCATTTCCTCCAAAAACAACTTCCAAGTAAGTGCACTG
GAGTGAGAAAATTAATTGCAAACACAGTGGAGTTTTCAGGTTCTTTTTTT
TTTTTTTGGATTTTGCTTAATTCTGTTCTAATTTTAGAGGAGAGTTGAGG
TCAATTCTTAATTTATTCCTATCATTAAATTCATCAGAAATTATAATTAC
CTTTATTCCAGTCCTTAATTATTTTTACCAATAATTTATATAATATTTGA
GGGGATTTAAATTGTATGATTTAAAAGAATATTTTAATTCATGACAATTA
TTCTGTAGCATTGATAACTGCATTTTTTTTCCATATAGAAAAGCACCATT
TTGTTCAAGATAAAAGGTTACAGCACAGCAGGGCAAGGGAGAAAATTTAA
CCTACCCCATGTGAAAGTATTACCCCCCAACTTTCTTACTAAGAGTTTAT
GTTAGTATGAATGAACCGATGCCACGGATAAAACGGTCAAAACAAAAAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCTGAGGAATTCTGCATGGCT
GAGAAGCACGTAAAAAAAAAATGTTCAACACACTTAATCATCAGGGAAGT
GCAAATCAAAACAACCCAGAGATTCCACCTCACACCAATAAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGCCAAGGATGTGGAGTAAGG
GGACTACTCCTCCATTGCTGGTGGGATTGCAAGCTCGTAAAACCACTCTG
GAAATCAGTCTGGACGTAGTACTACTGGAAGATCCAGCAATACCCAGAAG
ATGTTCCAACCAGTAGTAAGGACACATGCTCCACTATGTTCATAGCCTTA
TTTATAATAGCAAGAAGCTGGAAAAAACCCAGATGCCCCTCAACAAAGAA
ATGGATAGAGAAAATGTGGTATATTTACACAATGGAGTACTACTAAGCTA
TTAAAAACAGTGAATTTATGAAATTCTTAGGCAAATTGATGTATCTGGAG
GATATCATTCTGAGTGAGTTAACCCAATTTCAAAAGAACACACATTATAG
AACTCACTGATAAGTGGATATTAGCCCAGAAATTTAGAATACCCAAGATA
CTGTTTGCAAAACACATGAAACTCAATACCATAGAAGACCACAGTGTGGA
TACTTCCTTCCTTCTTAGAATGGGTAACAAATACCCCTGGAAGGAAATAC
CGAAAATTTTTTCATTCTT

Query= MSMg01no388_l03.b1 MSMg01no388_l03.b1 CHROMAT_FILE:
MSMg01no388_l03.b1 PHD_FILE: MSMg01no388_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:05 2005
         (482 letters)



>mm_chr3_17163158_17164038
          Length = 881

 Score =  862 bits (446), Expect = 0.0
 Identities = 476/492 (96%), Gaps = 11/492 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatagaaagtgggagaaacagcaagaatcatatataaaaacacaaaacaaacaggagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aaatagaaagtgggagaaacagcaagaatcatatataaaaacacaaaacaaacaggagat 436

                                                                       
Query: 61  aaggataatatcaaatttcctgtgaaatcaatcatttcatgggaacaaaattctcaaagt 120
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 435 aaggataatatcaaatttcctgtgaaatcaatcatttcacaggaacaaaattctcaaagt 376

                                                                       
Query: 121 aataaaaaaatatcataatcagactgccaaactagatattatacatatacacacattata 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aat-aaaaaatatcataatcagactgccaaactagatattatacatatacacacattata 317

                                                                       
Query: 181 taggtgtggagataccaagtttcatttcctccaaaaacaacttccaagtaagtgcactgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 taggtgtggagataccaagtttcatttcctccaaaaacaacttccaagtaagtgcactgg 257

                                                                       
Query: 241 agtgagaaaattaattgcaaacacagtggagttttcaggttc----------tttttttt 290
           ||||||||||| ||||||||||||||||||||||||||||||          ||||||||
Sbjct: 256 agtgagaaaatcaattgcaaacacagtggagttttcaggttctttttttttttttttttt 197

                                                                       
Query: 291 ttttttggattttgcttaattctgttctaattttagaggagagttgaggtcaattcttaa 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ttttttggattttgcttaattctgttctaattttagaggagagttgaggtcaattcttaa 137

                                                                       
Query: 351 tttattcctatcattaaattcatcagaaattataattacctttattccagtccttaatta 410
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 136 tttattcctatcattaaattcatcagaaattataattgcctttattccagtccttaatta 77

                                                                       
Query: 411 tttttaccaataatttatataatatttgaggggatttaaattgtatgatttaaaagaata 470
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 76  tttttaccaataatttatataatatttgaggggatttaaattgtatcatttaaaagaata 17

                       
Query: 471 ttttaattcatg 482
           ||||||||||||
Sbjct: 16  ttttaattcatg 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 881
Length adjustment: 10
Effective length of query: 472
Effective length of database: 871
Effective search space:   411112
Effective search space used:   411112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)