BAC Information

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BAC

Clone NameMSMg01-388P03
Chromosome3 (Build37)
Map Location 36,195,711 - 36,196,294
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103
Downstream geneAnxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388P03.T7 (MSMg01no388_p03.b1)MSMg01-388P03.TJ (MSMg01no388_p03.g1)
ACCAG491318AG491319
length804772
length of high quality
(start - end)
70 (63 - 132)586 (78 - 663)
definitionCHROMAT_FILE: MSMg01no388_p03.b1 PHD_FILE: MSMg01no388_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:23 2005CHROMAT_FILE: MSMg01no388_p03.g1 PHD_FILE: MSMg01no388_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGCTAAANGAATANTANATCCTGACCGCCNGGGAATTNCAGGATAGTT
CGAGGTACATGATACAGAGACCCCCATCTCTAAAAAAAAAAAAAAAAAAG
AGGAAGAAGAAGGAGAAAGAGAAAGGGATGGGGGGAGGGGTGATTTTCTT
TTTTGGTGGGGGGGGCGCGTTGCCGGTTCGCATTTATTTTTGGTTGTGCG
GGTTTTTTTCACCCCTTGGTTTTCGTCCTTTCTCTCCGTATTTTTTTTTT
CCGTTTTCCGAGAACCTCCATTCTCCAATCTCTTCCACCTCCCCCAACCG
ACCCAGCACTTTTTTTTTTTCTGGAGCCACGACACAGTCACAACTTTTTT
TTTTCTCTCTCTTTCTTTTGCTGTTGTTTTTTTTTTTTTTTTTTTTTTTA
GGCCGGACTTCCCTCTCTTTAAANNANNAAAANAAAAGAGAAAANAAAAG
GAATTTANAAAAATATCATCATTTTTAATCTTTATTTTTCTTCACCTTTC
TCTCATTCTTATTTTCACAACTTTTCCTTTTTTTTTTCTCCTACCTTTGT
CCCTCTTACTTCTTTTTTTTTCTCTTTTTTGTTTTTTTCCTTTCCTTCTT
TTTCTTCTTTTTATTTTTCTCTTTTGTATCATTTTTTTCTTGTCTTTTAT
TTTTTTTTCTTTTTCCTCTTTTCTTTTTTTCCCTTTATTTTTCTTTTTCC
TTCATACGTCTTTTCTCTTTTCTTTTTCTTTACTCTTCTTTTTTCCCTTC
TTTTTTTTCTTTCTCCCCGGTCTTTTTTTTCTTTCTTTTTCGGTCTCTTT
TTTG
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTTTCCTTTCCCAACTCAAAA
CACCTTGACCTTCCAGAAAAAAAAAAAAAAAAGGAATGGTGTTTGAGACT
TGAATTTAATCTCAAAGAACCAGAATCATTACAAAATGTGACATGAATAA
ATCAATTACTAAAGTGAGCACAGGCATAGGAGCCAGCTTAAAAGCCATGG
TGAAAGGGACACAGAAGAACTAGAGGGAAACAGCTATAGATGACGTGTCC
TGAATCTCAAAGCAGACCATATCTTATGAAGACAGCATGGTGATTAATCA
AGAGCAGCCTTTGCACACAAGGCTGATCCAGGGGTTCGGGGAAGCTGCTC
AGACTGAGAACAGGTGCCGCCCATCAGTCAAATGCATCAGTCAAATGCAG
GCAACGTCTTCATGTTCTTTGCTGGGAAGCAGTGGTGGACAATGTTTATA
CAGGGATAGTGACAAAGAATCAGAACATGTTAACAAGCATCGAGACGATT
CAGGTATTTAGGGTAGCATTTGGAAAAAAAACTTGAAGAAACTGAAATTT
TCATTCATAATAAACCCACTAAATAGCTGCTGGCTATTTTGTGGAANAAA
AAATCTATATAAACAAGACATAGTGGCTCATACTTTTAATCTGAACATGC
AAGAGGCAGAGCCAGAAGACTGTCCCCAATTTTGAAGCCAGCCTGGGCTA
TACAGTAAGTTCTAGGACAGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_p03.g1 MSMg01no388_p03.g1 CHROMAT_FILE:
MSMg01no388_p03.g1 PHD_FILE: MSMg01no388_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:23 2005
         (586 letters)



>mm_chr3_36195511_36196494
          Length = 984

 Score = 1002 bits (518), Expect = 0.0
 Identities = 570/589 (96%), Gaps = 8/589 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctttcctttcccaactcaaaacaccttgaccttccagaaaaaaaaaaaaaaaaggaat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||
Sbjct: 201 tcctttcctttcccaactcaaaacaccttgaccttccagaaaaaaaaaaaaaa--gtaat 258

                                                                       
Query: 61  ggtgtttgagacttgaatttaatctcaaagaaccagaatcattacaaaatgtgacatgaa 120
           | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 g-tgtttgacacttgaatttaatctcaaagaaccagaatcattacaaaatgtgacatgaa 317

                                                                       
Query: 121 taaatcaattactaaagtgagcacaggcataggagccagcttaaaagccatggtgaaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 taaatcaattactaaagtgagcacaggcataggagccagcttaaaagccatggtgaaagg 377

                                                                       
Query: 181 gacacagaagaactagagggaaacagctatagatgacgtgtcctgaatctcaaagcagac 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 378 gacacagaagaactagagggaaacagctatagacgacgtgtcctgaatctcaaagcagac 437

                                                                       
Query: 241 catatcttatgaagaca--gcatggtgattaatcaagagcagcctttgcacacaaggctg 298
           ||||||| | |||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 catatctcaggaagacacagcatggtgattaatcaagagcagcctttgcacacaaggctg 497

                                                                       
Query: 299 atccaggggttcggggaagctgctcagactgagaacaggtgcc-gcccatcagtcaaatg 357
           ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 498 atccaggggttcggggaagctgctcagactgagaacaggtgccagcc-atcagtcaaatg 556

                                                                       
Query: 358 catcagtcaaatgcaggcaacgtcttcatgttctttgctgggaagcagtggtggacaatg 417
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 557 catcagtcaaatgcaggcaatgtcttcatgttctttgctgggaagcagtggtggacaatg 616

                                                                       
Query: 418 tttatacagggatagtgacaaagaatcagaacatgttaacaagcatcgagacgattcagg 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tttatacagggatagtgacaaagaatcagaacatgttaacaagcatcgagacgattcagg 676

                                                                       
Query: 478 tatttagggtagcatttggaaaaaaaacttgaagaaactgaaattttcattcataataaa 537
           |||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tattcagtgtagcatttg-aaaaaaaacttgaagaaactgaaattttcattcataataaa 735

                                                            
Query: 538 cccactaaatagctgctggctattttgtggaanaaaaaatctatataaa 586
           ||||||||||||||||||||||||||||| || ||||||||| ||||||
Sbjct: 736 cccactaaatagctgctggctattttgtgaaaaaaaaaatctgtataaa 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 984
Length adjustment: 10
Effective length of query: 576
Effective length of database: 974
Effective search space:   561024
Effective search space used:   561024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)