BAC Information

Click to search

BAC

Clone NameMSMg01-388P08
Chromosome3 (Build37)
Map Location 59,867,026 - 59,867,312
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac
Downstream geneSucnr1, LOC669823, LOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388P08.T7 (MSMg01no388_p08.b1)MSMg01-388P08.TJ (MSMg01no388_p08.g1)
ACCAG491328AG491329
length807736
length of high quality
(start - end)
289 (67 - 355)555 (72 - 626)
definitionCHROMAT_FILE: MSMg01no388_p08.b1 PHD_FILE: MSMg01no388_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:24 2005CHROMAT_FILE: MSMg01no388_p08.g1 PHD_FILE: MSMg01no388_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCGAACAGGATCCGCGGAAT
TCATTGCCTACCCGAAAGGGACTAGTTAGAGGCAGAAGAAAGACAGCAGA
GGCTAATGACAGCTAAATGGAGTCAAAGTACCTGGTAAACTTAAATGAAA
ATGGCATTGTAAAACCTATCTTGTAGCACAGTAAATGCACAATAAAAATG
ATATAAAAGGAAATGGTCCAAGGTGTGGGATATTTTCATTATATTCAACT
CGCCATGGTTTCCTGGTAAGCAGTTGTGTCAAAAATTGGCACACTTCAAA
TATGTGGATAAAGATACATACAAATCTATGGATAAAGTGTGTGTGGTGTG
TGAGGTAGTGTGCATGCTCCCCCCACACCCCTCCCCCTCCTCCACTCTTT
TTTTTGGTTTTTCCGACACCCCCCCCCCCCCNANACNAAATTTAATANAA
ACCTTTTTTCCCCCCACCTCACCACCCCCCCCCCCCACCCCCTACCCACT
CTCCTCCCCCCCCATATCTCCCCCTTCCCCCTCCCTCCCTCTTCTCCCCT
CTCCCCTCCCCCTCTTTCCCTCCCATACCACCCCTCTCCCCCTCCCTCTC
TCTTCTCCACTCCCTCCTCCCCCCTTCCCTTTCCCCCCCCCCCCTCTCCC
CTTCCCTCCCATCGTCCTTCCCCTCTCTCTCACTCATCTCCCCCTCCCCC
CCTCTTCTTTACCTCTCTCCCTCTTCTTTCCCTTCCCTCCCCCTTCCTTC
CCCCCTACCCTCCCCTTCTCTCCTTCCTCCACCCCTATCTTTTCATCCCT
TCTCCCT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCG
TCTGGCGGTTCTTTTTATTATTGGACATAGTACTACTGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGA
CACATGCTCCACCACGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACATCTACACAATGGAGTACTACTCGGCTATTAAAAAGAATGAATTTAT
GANATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGTA
TATTAGCCCAAAACCTAAGATACCCAAGATATAAGATACAATTTCCTAAA
CCTATGAAACTTCAGAAAAATGAAGACTGAAGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_p08.b1 MSMg01no388_p08.b1 CHROMAT_FILE:
MSMg01no388_p08.b1 PHD_FILE: MSMg01no388_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:24 2005
         (289 letters)



>mm_chr3_59866826_59867515
          Length = 690

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%), Gaps = 1/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggactagttagaggcagaagaaagacagcagaggctaatgacagctaaatggagtcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agggactagttagaggcagaagaaagacagcagaggctaatgacagctaaatggagtcaa 428

                                                                       
Query: 61  agtacctggtaaacttaaatgaaaatggcattgtaaaacctatcttgtagcacagtaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agtacctggtaaacttaaatgaaaatggcattgtaaaacctatcttgtagcacagtaaat 368

                                                                       
Query: 121 gcacaataaaaatgatataaaaggaaatggtccaaggtgtgggatattttcattatattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gcacaataaaaatgatataaaaggaaatggtccaaggtgtgggatattttcattatattc 308

                                                                       
Query: 181 aactcgccatggtttcctggtaagcagttgtgtcaaaaattggcacacttcaaatatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aactcgccatggtttcctggtaagcagttgtgtcaaaaattggcacacttcaaatatgtg 248

                                                          
Query: 241 gataaagatacatacaaatctatggataaagtgtgtgtggt-gtgtg 286
           ||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 247 gataaagatacatacaaatctatggataaagtgtgtgaggtagtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 690
Length adjustment: 9
Effective length of query: 280
Effective length of database: 681
Effective search space:   190680
Effective search space used:   190680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)